Pan troglodytes (chimpanzee): 464659
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Entry
464659 CDS
T01005
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
ptr
Pan troglodytes (chimpanzee)
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ptr03036
]
464659 (SHOC1)
Chromosome and associated proteins [BR:
ptr03036
]
Eukaryotic type
Meiosis-specific proteins
Others
464659 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
464659
NCBI-ProteinID:
XP_016816914
Ensembl:
ENSPTRG00000021260
VGNC:
4640
LinkDB
All DBs
Position
11:26683873..26792723
Genome browser
AA seq
1508 aa
AA seq
DB search
MFSALKYHAIDYLYENVVRKKFYRDALLLRIPSCLYQDESYHVAVTDNKFRRPWTRVSAV
SVPGMTDTSVLDQWKASFFVEDFLEKKTITRMVTQINCEFEEVVPSSNPDSQIEVEEVSL
YTHMDYNEVFTPVSCLEKCSALQNQNQDLFIDDKGILFVSNRKHLPTLPTLLSRLKLFLV
KDPLLDFKGQIFTEANFSRECFSLQETLEAFVKEDFCMDKVNFCQEKLEDTICLNKPSSF
LIEYEFLIPPSLKPEIDIPSLSELKELLNPVPEIINYVDEKEKLFERDLTNKHGIEDIGD
IKFSSTEILTIQSQSEPEECSKPGELEMPLTPLFLKCQHSSVNSLRTELQTFPLSPVCKI
NLLTAEESANEYYMMWQLERCRSPLNPFLLTVPRIQEPHSQYSVTDLKKIFSVKEESLVI
NPEKAEWWKQAGLNLKMMETLEHLNTYLCHDNLSSNDTKIEIFLPTKVLQLESCLEHKSR
SSPIALIDEKSTNAHLSLPQKSPSLAKEVPDLCFSDDYFSDKGAAKEEKPKNHQEPVNRI
IQKKENNDHFELDCTGPSIKLPSSSIIKKASFEHGKKQENDLDLLNDFIMLRNKYKTCTS
KTEVTNSDEKHDKEACSLTLQEESPIAHINKTLEEINQERGTDNVIEIQASDSQCQAFCL
LEAAASPILKNLVSLCTLPTANWKFATVIFDQTRFLLKEQEKVVSDAVHQGTIDEREMTF
KHAALLHLLVTIRDVLLTCSLDTALGYLSKAKDIYNSILGPYLGDIWRQLEIVQFIRGKK
PETNYKIQELQCQILSWMQSQQQIKVLIIIRMDSDGEKHFLIKILNKIEGLTLTVLHSNE
RKDFLESEGVLKGISSCVVVHNQYIGADFPWSKFSFVVEYNYVEDSCWTKHCKELNIPYT
AFKVILPDTVLERSTLLDRFGGFLLEIQIPYVFFASEGLLNTPDILQLLESNYNISLVER
GCSESLKLFGSSERYVVVTIDEHTAIILQDLEELNCEKASDNIIMRLMALSLQYRYCWII
LYTKETLNSEYPLTEKTLHHLALIYAALVSFGLNSEELDVKLIIAPGVEATALIIRQIAD
HSLMTSKRDPHEWLDKSWLKVSPSEEEMYLLDFPCINPLVAQLMLNKGPSLHWILLATLC
QLQELLPEVPEKVLKHFCSITSLFKIGSSSITKSPQISSPQENRNQISTLSSQSSASDLD
SVIQEHNEYYQYLGLGETVQEDKTTTLNDNSSIMELKEISSFLPPVTSYNQTSYWKDSSC
KPNIGQNTPFLINIESRRPAYNSFLNHSDSESDVFSLGLTQMNCETIKSPTDTQKRVSVV
PRFINSQKRRTHEAKGFINKDVSDPIFSLEGTQSPLHWNFKENIWEQENHPFNLQYGAQQ
TACNKLYSQKGNLFTDQEKCLSDESEGLTCESSKDETFWRELPSVPSLDLFRASDSNANQ
KEFNSLYFYQRAGKSLGQKRHHESSFNSGDKESLTGFMYSQLPQFKKRRLAYEKVPGRVD
GQTRLRFF
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagcattgaaatatcatgcaatagactatttatatgagaatgtggttagaaag
aagttttacagagatgctttattgcttcgaatcccttcatgtttatatcaagatgaaagt
taccatgtagcagttactgataataaatttaggaggccatggacaagagtctcagctgtt
tcagttccaggaatgacagatacctcagtcttggaccaatggaaagcaagtttctttgtg
gaggatttccttgagaaaaaaacaattacaagaatggtgacccagattaattgtgaattt
gaggaagttgttccaagttcaaatccagactcccaaattgaagtagaggaggtcagttta
tacacccacatggactacaatgaagtctttacccctgtcagttgtttagaaaaatgttca
gcacttcaaaaccagaaccaagatttatttattgatgataaaggaatactttttgtaagt
aatagaaaacacctaccaactttgcctactctcttgagtagactaaaactgtttttggta
aaggatcctcttttagatttcaaaggacagatcttcacagaagctaatttttccagggaa
tgtttctctcttcaagaaactttggaagcttttgtgaaagaagatttttgtatggataaa
gtgaacttttgtcaagagaaactagaagatacaatatgtttaaataagccgtcaagtttt
cttattgagtatgaattcttaatacctccaagcctcaaaccagaaattgatattccatca
ctctcagaactgaaggagttattaaacccagtgccagaaataataaactatgtagatgaa
aaggaaaagctttttgaaagagatcttactaacaagcatggaattgaggatatcggggat
ataaaattcagctccacagagattttgaccattcaaagccagagtgaaccagaagagtgc
agtaaaccaggagagttagaaatgccactaactcctctattcctaaaatgccaacattct
tcagtgaattcattacgtacagaacttcagacatttccattatctccggtttgtaaaatt
aatttgcttactgctgaagaatcagctaatgaatactacatgatgtggcaattagaaaga
tgtagaagccctttgaacccatttttgcttacagtgccaagaattcaagagccccacagc
caatattcagttacagatttgaaaaagatattttctgttaaagaagaaagccttgtgatt
aatccggaaaaggcagagtggtggaaacaagcaggactaaatctgaaaatgatggaaaca
ttggaacatctgaatacatatttatgtcatgataatttgtcttctaatgacactaaaatt
gagatatttttgcctacgaaagtgcttcaattagaatcatgtctagaacataaaagtcgt
tcttcacctattgcacttattgatgaaaaatctacaaatgctcatttatcacttccacaa
aagagtccatctctggcaaaagaagtaccagatctatgtttttctgatgactatttctct
gataaaggagcagcaaaagaagaaaaaccaaagaatcaccaagaaccagtaaacagaata
atccaaaagaaagaaaataacgatcactttgaacttgactgcacaggaccatctattaaa
ttaccttcctcttcaataattaaaaaagcatcttttgaacatggcaaaaaacaagagaat
gatttggaccttttgaatgactttattatgctgcgaaataaatataagacttgcacctca
aagactgaagtcacaaacagtgatgaaaaacatgataaagaagcatgttctttgacactt
caagaagaaagtcctattgctcatattaataaaaccctggaggaaataaatcaggaaagg
ggaacagataatgtcattgaaattcaagcgtcagatagccagtgccaagcattttgcctc
ctcgaagcagcagcttctcctatcttaaaaaatcttgtatccttgtgtaccctccctact
gctaattggaaatttgccactgttatttttgaccaaacaaggtttctcttaaaggaacaa
gaaaaagtagtaagtgatgctgttcaccaaggtacaattgatgaaagagaaatgactttc
aagcatgccgctctcttacatcttctggtaacaattagagatgtccttttaacatgcagc
ttggacacagcattgggatatttgtcgaaggcaaaagatatctacaacagcattttaggc
ccctatttgggtgacatttggagacagctggagattgtacagtttattagggggaaaaag
cctgaaaccaactacaagatacaagaattgcaatgtcagatactaagttggatgcaaagt
caacagcaaattaaggtactgattataataagaatggactcagatggtgaaaaacatttt
ctcattaaaattcttaacaaaatagaaggtttaacactgactgtccttcattcaaatgaa
agaaaagattttctggaatctgaaggtgttttaaagggtataagttcctgtgtagttgta
cataatcaatatattggagcagatttcccctggagtaagttctcatttgtggtggaatac
aattatgtggaagactcttgttggactaaacactgcaaagagttgaatattccttacacg
gcctttaaagtgattcttccagacacagttttagaaagaagcaccttgctggatagattt
ggaggttttcttttggaaattcagattccatatgtgttttttgcatctgaaggacttctt
aatactccagacatacttcagctgctagaatccaactataacatctcactagtagagaga
ggctgcagtgagtcattgaaactctttggaagttcagagcgttatgtagtggtgacaatt
gatgaacacactgccataattttgcaggatctagaagaattgaattgtgagaaggcatca
gacaatatcattatgaggctgatggcattatcattacagtacagatattgttggataatt
ttatataccaaagaaacattaaattcagagtatccgcttacagaaaagacacttcatcac
ctagcactgatttatgcagctttggtttcatttgggctaaactctgaagaactggatgta
aagcttataattgccccaggagtagaagcaactgccttgataattcgacaaattgctgac
cacagtttaatgacctcaaagagagatcctcatgaatggttggataaatcctggcttaaa
gtttcaccatctgaggaagaaatgtacttacttgattttccatgtattaacccattggtg
gctcagctcatgctaaataaaggaccttcactgcattggatattattagcaactctgtgt
caacttcaggaactcctacctgaagtcccagaaaaagtgttaaagcatttttgtagcatc
acttccctattcaagattggttcttcttccataacaaaatcaccgcaaatttcgtcacct
caggaaaataggaatcagattagtaccttgtcttctcaaagttcagcttctgatttagac
tctgtcattcaagaacataatgaatattatcagtatttaggattaggagagacagtgcag
gaagacaaaaccaccactttgaatgacaactcttccattatggaactaaaagaaatctca
agttttttaccacctgtgacttcatacaatcagaccagctactggaaagactccagctgt
aaacctaatatagggcagaatactccttttctaattaatatagaatcaaggagaccggct
tataactcctttctaaaccacagtgattcagagtcagatgtcttttctttgggtctaaca
caaatgaactgtgagactataaaatcaccaactgacactcagaagagagtgtcagttgtc
ccccgttttataaattctcagaaaaggagaacacatgaagcaaaaggtttcataaataaa
gatgtatcggaccctatcttttcactagagggcactcaatctcctcttcattggaacttt
aaggaaaatatatgggaacaagagaatcacccgttcaacttacaatatggtgcacagcag
actgcatgtaacaaattgtactctcagaaaggtaatttattcactgatcaggaaaaatgt
ctatcagatgagtctgaaggcctcacatgtgaaagttcaaaagatgagactttctggaga
gaattaccatctgtccccagtttggatttatttcgtgcttctgattctaatgcaaatcaa
aaagaattcaacagcctttatttctaccaaagagctggaaaaagtttaggacagaaaagg
caccatgaatcttcatttaactcaggagacaaggaatcattaacaggttttatgtactca
caactaccacaattcaaaaaacgacgtctagcatatgaaaaagtccctggtagagttgat
gggcagactcggctgaggtttttttga
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integrated database retrieval system
