Pan troglodytes (chimpanzee): 472167
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Entry
472167 CDS
T01005
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
ptr
Pan troglodytes (chimpanzee)
Brite
KEGG Orthology (KO) [BR:
ptr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptr03021
]
472167 (SCAF8)
03041 Spliceosome [BR:
ptr03041
]
472167 (SCAF8)
Transcription machinery [BR:
ptr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
472167 (SCAF8)
Spliceosome [BR:
ptr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
472167 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
472167
NCBI-ProteinID:
XP_003311603
Ensembl:
ENSPTRG00000018727
VGNC:
9523
UniProt:
H2QTY0
A0A6D2X8L7
LinkDB
All DBs
Position
5:166704678..166880328
Genome browser
AA seq
1337 aa
AA seq
DB search
MPQPLLPALPPLSSPSGAGSCGPSGGECSGRRLFRRRARGLRSDNMEAVKTFNSEDCAST
PACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKC
KPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVL
NLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTTAMSNTPGTPVTPVTPANVVQGL
PDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQ
ALTAQLTAAAAAANTLTPLEQGVSFNKKLMDRFDFGEDSEHSEEPKKEIPASQLSHVSES
VNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSASPSQGSSQQH
FLEPEVNLDDSIDIQQQDMDIDEGQDGVEEEVFEQEAKKVAVRSRSRTHSRSRSRSPRKR
RSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSV
CSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSS
GSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQET
VNTEWETVKSSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPTVSL
VPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPAIPPVVPTS
LVQPSLSMTPETVKDVGFGSLVIPGGSVASNLATSALPAGNVFNAPTKQAEPEEKVPHLI
DHQISSGENTRSVIPNDISSNAAILGGQPPNVTSNSGILGVQRPNVSSNSEILGVRPSNV
SSSSGIIAAQPPNILNNSGILGIQPPSVSNSSGLLGMLPPNIPNNSGLVGVQPPNVPNTP
GLLGTQPPAGPQNLPPLSIPNQRMPTMPMLDIRPGLIPQAPGPRFPLIQPGIPLQRGIPP
PSVLDSALHPPPRGPFPPGDIFSQPERPFLAPGRQSVDNVTNPEKRIPLGNDNIQQEGDR
DYRFPPIETRESISRPPPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRPPVDIRENLVRP
GIDHLGRRDHFGFNPEKPWGHRGDFDEREHRVLPVYGGPKGLHEERGRFRSGNYRFDPRS
GPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRDRIQNTWVPPPHAR
VFDYFEGATSQRKGDNVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTV
ADIESEPVVESTETEGT
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgccgcagccgctgctgccagcgcttcctcctctgtcttcgccgagcggggctggttcc
tgcggcccgagcggcggggagtgcagtggccgccgcctcttccgccgccgggctcggggc
ctccgcagcgacaacatggaggccgtgaagaccttcaatagcgaggattgtgcctctact
cctgcttgtacagactgcttttccagcagcatggacacaagaagcatattgtattccctg
aatgactataaaccacccatttcgaaagcgaaaatgacccaaattactaaggcagccatc
aaagctattaagttctataaacatgtggtacagagtgttgagaagtttattcagaaatgt
aaaccagaatacaaagtacctggactttatgttattgactccattgtgcgacaatcccga
catcagtttggtcaagaaaaggatgtgtttgcacccagatttagtaataacatcattagc
actttccagaatttatatcgttgccctggggatgacaagagtaaaatagtgagagtacta
aacttatggcagaagaataatgtatttaagagtgagattattcagcctcttttggatatg
gcagccgggattccgcctccagttgtcacacctgttttggccagcactaccactgctatg
agcaatactccaggaactcctgtgacacctgttactccagccaatgtggtccaaggctta
cctgatccatgggtatctcagataacaaatacagatacacttgcggctgtagctcagatc
ttgcaaagtcctcaaggccagcagcttcaacaattaatacaaaccttacagatacaacaa
cagaagccccagccttccattctgcaggccctagatgctggtcttgttgttcagttgcaa
gctcttacggcacaacttacagctgcagctgcagctgccaacactcttactcccttagaa
cagggagtctcctttaacaagaagttgatggataggtttgattttggggaagactctgag
catagtgaagaacccaaaaaggaaattccagcttcacaactttctcacgtttcagaatct
gtgaacaattccatttttcatcagatagcagaacaactacaacagcaaaacctagaacat
ctcagacagcagctcttggagcagcaacagcctcaaaaggccactcctcaggatagtcag
gaaggaacatttgggtcagagcattcagcgtcaccatcacaagggagtagtcagcagcat
tttcttgaacctgaagtcaatttggatgattccatagatattcagcaacaggatatggat
atagatgaagggcaagatggagtggaagaggaggtctttgaacaagaagctaagaaagtg
gcggttcgctcaagatcaagaacacattcacgatctcgttcaagatcaccaagaaaacga
aggtctaggtcacggtctggctctagaaagcgtaaacacagaaagcgatcacgatcccgc
tcaagagaaagaaagaggaaatcatcacggtcgtattcaagtgaaaggagagccagagaa
agggagaaagaacgacagaaaaagggattacctccaattagatctaaaacactaagtgta
tgtagtactactctctgggttgggcaagtggacaagaaggcaacacagcaagacttaacc
aacctgtttgaagagtttggacagattgaatccattaatatgattcctccccggggctgt
gcttatgtctgcatggttcatcgacaagacgcatttcgagctcttcagaaactcagttct
ggatcatataaaattgggtccaaggtcattaagattgcttgggctttaaacaaaggtgta
aaaacagaatacaaacaattctgggatgtggatcttggagttacgtatataccatgggaa
aaagttaaagtggatgacttggaaggttttgcagaaggaggcatgattgatcaggagact
gtaaatactgagtgggaaactgtgaaaagctcagaacctgttaaagagacggtccagaca
actcagagcccaactccagttgaaaaggagacagtggtcacaacccaggcagaggttttc
cctcctcctgttgctatgttgcagattccagtggcgccagccgtgcctacagttagttta
gtcccaccagcatttcctgtgtcgatgccggttcctcctcctggattcagtccaatccct
ccacctccttttttaagagcaagttttaacccttcacaaccaccacctggtttcatgccg
cctccagttcccccacctgttgtgccaccccctgcgattccaccagtagtaccaacatct
ttagtgcagccgtcattatccatgacaccggaaactgtgaaagatgttggatttggtagc
cttgttataccaggcggttctgttgccagcaatcttgctacttccgctctgccagctgga
aatgtttttaatgctccaactaaacaggcagagcctgaagaaaaagtacctcatcttata
gaccaccagatttcttctggtgaaaacaccagatcagtgattccaaatgatatttcaagt
aatgctgcaattttaggaggacagccgccaaatgtgacaagcaattctggaattctggga
gtccaaagaccaaatgtatcaagtaattctgaaattcttggggtccggccatctaatgtt
tccagtagttctgggattattgcagcccaaccaccaaatattctaaataactctggaata
ttgggaatacagccacccagtgtgtcaaatagttctggacttttgggaatgctaccccca
aatatacctaacaattctggacttgtaggagtacagccaccaaatgttccaaatactcct
ggacttctgggaacacagccaccagctggacctcaaaacttaccccctttaagtatccct
aatcaaaggatgcccacaatgccaatgttagacattcgtccgggactaataccacaggca
cctgggccaagattccctttaatacagcctggaattccactccaacggggaatcccaccc
ccatcggtacttgattcagctcttcatccaccaccccgtggaccttttcctccaggagat
atttttagtcaaccagaaagaccttttttagctcctggaagacaaagcgtagacaatgtt
actaacccagaaaaaaggataccacttgggaatgataacattcaacaggaaggagataga
gattaccggtttcctcctatagaaaccagggaaagcattagtagacctccccctgtggat
gttagagatgtggttgggcggcctatagatccaagagaaggtcctggacggcctccacta
gatggtagggatcattttggaagacctcctgtagatataagagagaatcttgtgaggcca
ggtatagatcatcttggtcgaagagaccactttggctttaatccagagaagccctggggg
catagaggagattttgatgagagagagcatcgggttctaccggtctatggtggtccaaaa
ggcttacatgaagaaagaggtagatttcggtctggaaactatcgatttgatcctagaagt
ggtccttggaaccgaggatttggacaagaagttcacagagattttgatgaccgcagaaga
ccctgggagaggcaaagggatagggatgacagagattttgatttctgcagagaaatgaat
ggaaatcgtcttggacgagacagaattcaaaacacttgggttccccctcctcatgctcgg
gtttttgattattttgaaggggccacttctcaacgaaaaggtgataatgtgcctcaggtt
aatggtgaaaatacagagagacatgctcagccaccacctataccagtacagaatgatcct
gaactttatgaaaaactgacatcttcaaatgaaataaacaaggagaagagtgacacagtt
gctgatatagaaagtgaaccagtggtagaaagcacagaaactgaggggacataa
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integrated database retrieval system
