KEGG T09180: PtA15

Puccinia triticina (wheat leaf rust): PtA15_6A273

Entry

PtA15_6A273       CDS       T09180

Name

(RefSeq) uncharacterized protein

K10777

DNA ligase 4 [EC:6.5.1.1]

Organism

ptrc Puccinia triticina (wheat leaf rust)

Pathway

ptrc03450

Non-homologous end-joining

Brite

KEGG Orthology (KO) [BR:ptrc00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PtA15_6A273
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ptrc03400]
    PtA15_6A273
Enzymes [BR:ptrc01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PtA15_6A273
DNA repair and recombination proteins [BR:ptrc03400]
Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     PtA15_6A273

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT RNA_ligase DNA_ligase_A_C LIG3_BRCT

Other DBs

NCBI-GeneID:

77810856

NCBI-ProteinID:

XP_053021200

LinkDB

Position

6A:complement(join(2087578..2087591,2087676..2087755,2087838..2087867,2087983..2088013,2088136..2088212,2088364..2088542,2088630..2088915,2089014..2089119,2089184..2089327,2089398..2089504,2089574..2089631,2089727..2089780,2089843..2089878,2089956..2089999,2090083..2090202,2090279..2090338,2090412..2090511,2090585..2090629,2090697..2090779,2090853..2091060,2091134..2091163,2091277..2091365,2091463..2091558,2091645..2091966,2092037..2092122,2092180..2092307,2092386..2092535,2092663..2092877,2092958..2093009))

AA seq 1009 aa
MASHTKSEDDSKAKLEPGMEEPCGDDPLRALGPSPPFHHLCRVLDELSSPKKPTELSKLR
QKCLAALFQNWRKICGNDLYPCIRLLIPQSDRGRPMYSLKEFRLGQLYCGALGLDKKTSS
VAKRLLNWKSEQTDENNKESSVGDFTKVLYTEIDNRSTVDKTLLSIDDINNQLDSLAATT
SEAKRLEIVKVWLEHITPKDHMWLIRIILQDLRVGLTELNVLRSFHPDALDLFNICTDLK
TVCQTLHSPKIPLKDREAGLKTFKVFKPMLSKRSTKDLPDIVKLMLSGKHNEFLIEEKMD
GERIQLHKRGEQYQYWSRKGTDYTALYGANPTSGCLTRYIHGAFKPGVDDVILDGEMLVW
DPKKERILPFGSLKSLKSSSTDPLQPRALFKVFDILYLKGKGKAEGTSFINKPLSERRKV
MESGRVFVEVETSLEFCYSVRGKDTQDIKASFEKILEESGEGLIIKKLDSRYQVNARTDD
WYKVKPDYMDELGETFEVLAVGGFWGRGKKGGTFGSFLVALIDNENSDPSQGIFRYKTLC
RVGSGLTVGESTQIMTKLEGKWFKWDKKGSGRNPDWLDIGKGSGQAPEVWWHREDSFLLT
IKGTEIITSYAHGCQFSIRFPRSIRFDPEREIGDCMSYEDLLGIANKSQDKNKLGDNLSG
HVRKRKREQLSQPTSSLMPLKRSDSHKVFYGAIFWVLQGLEDAAESKSALEVMLNRNGGK
IVHTIPRPAPDREHFCITRRADFWDAEKAIRHGLQLIHPQWVLDSIEAGYRISLTAPKYV
VDMAQNLDDNILSEQTSVATVVKEENDSEGCGDSADAQSDATTVGEDFQSEGSATEDEVS
DHDLREDSPQFSQAMVDSSASVSGKPPGCQVVSSPKEQLATELDSEVKGEGGKGIFYPLV
FYLDNKPIVHRLQSSIVTDHTVLDGGDRESSKLFAEIAGLIKANGGRIVSDVSDPETTHI
ICSQTDTSRCVDFIRMDKDRPKRRRLVLAEWVIDSVEGDSCLYEADYLP

NT seq 3030 nt +upstreamnt +downstreamnt
atggcaagccacacgaagtcggaagacgatagcaaagcgaagcttgagccagggatggag
gaaccttgcggcgatgatccactaagagctcttggtccttcgccgccgtttcatcactta
tgccgcgtactagatgagttgtcttctccgaaaaaacctacagaactctctaagcttcgt
caaaaatgtttggccgcacttttccagaattggcgcaagatctgcggaaacgacttgtat
ccatgcatccgactacttataccacagtctgatagaggacgaccaatgtactctttgaaa
gaattcaggttggggcagttgtattgtggcgctttaggcttggacaagaaaacgtcatcg
gtcgcaaaacgtctcttgaattggaaaagtgaacagactgatgagaacaacaaagagtct
tcagttggtgattttacaaaggtgctctatacggagatcgacaaccgatccactgtcgat
aaaaccctcctctcgattgacgatattaacaaccagttggattcattagccgcgacgact
tcagaggcgaagagacttgaaatagtaaaagtttggctcgagcatattacccccaaagat
catatgtggctgatcagaatcattcttcaagatctcagagtagggctgaccgaactcaac
gttctgagatcttttcatcctgatgcacttgatttattcaacatctgtacggaccttaag
actgtctgtcaaacgcttcattcccccaagattcctctgaaagacagagaagctggtctg
aagactttcaaagtgttcaaaccgatgctttccaaaaggagcacgaaagatctaccagat
atcgtcaagttgatgctgtcaggaaagcacaacgagtttttgatcgaagagaagatggat
ggcgaacgaatacaactccacaagaggggagagcaataccaatattggtcgaggaaaggt
acagattatacggctttgtacggagccaatccgacaagtggctgcctgacgcgttacatt
catggtgctttcaaaccaggggtcgacgatgttatactggacggcgaaatgttggtgtgg
gatccgaaaaaggaaagaattctcccctttgggagtttgaagtctttaaagtcgtcttct
actgacccgttgcaaccacgcgccttgttcaaggtgtttgatatattgtacctcaaagga
aaaggcaaagctgagggtacgagctttatcaacaagcctttatcagaaagacgaaaggtg
atggaaagtggaagggtctttgtggaggtcgaaacctcattggagttttgctattccgta
cgaggtaaagatacacaggacatcaaggcgagctttgagaaaattttggaagaaagcggc
gaaggattaattattaagaaactcgattccagatatcaggtcaacgcccggacggatgat
tggtacaaagttaagccagattatatggatgaattaggggaaacttttgaagttttggca
gttgggggattctggggccgaggaaagaagggagggacgtttggaagtttcctcgtcgca
ttaattgacaatgagaattccgatccgtcgcaagggattttccggtataaaaccctttgt
cgcgtaggatcaggtctcactgttggcgagtcgacgcagatcatgaccaaacttgaagga
aagtggtttaaatgggataagaaggggtcaggacgcaaccctgattggttggacatcgga
aaaggctcggggcaggctccagaagtttggtggcaccgggaagattcatttttgcttaca
atcaaaggtacagaaatcatcacttcttatgcacatgggtgtcaattctccatccggttc
cccagatctattcggttcgatccagagagagagattggggattgtatgtcttatgaagac
cttttgggcattgccaacaagtcgcaggacaaaaacaagctcggcgataatcttagtggc
catgtgagaaaaagaaagcgagaacagctatctcaaccgacatcttcactcatgcctttg
aagcgcagcgattcccacaaggtcttttatggggcaatattttgggtactacaaggtctc
gaagacgcagccgaaagtaaaagtgctctggaggtaatgctgaatcgcaatggagggaag
atcgttcacaccattcctcgaccagcgcctgatcgagagcatttttgcatcacccggaga
gctgatttttgggatgccgaaaaagcaattcgacatggcctgcaattgatccacccacag
tgggtccttgattcaatagaggcaggctataggattagtctcacagcacccaaatacgtc
gtcgacatggcacaaaatctagatgataatattttatcggagcaaaccagtgtcgcgacg
gtcgtaaaggaagaaaatgactcggagggctgtggggattcggctgacgcgcagtcagat
gcaacgactgtcggcgaagattttcagtcagaaggtagtgccaccgaagatgaagtcagt
gaccacgatctccgagaagactcgcctcaattctcccaggcaatggtcgattcatccgct
tctgtatcaggaaagcctccaggttgtcaagttgtatcgtcgccaaaggagcaattggca
actgaactggattcggaagtaaagggggaaggcggaaaaggaatattttatccgcttgta
ttttacctggataataagccgatagttcatcgtttacaaagctcaatcgttactgatcac
acggttttagatggcggggatcgtgaatctagcaaattatttgctgaaattgctggattg
attaaagcaaatggcggtcgaatcgtgtcggacgtgagcgatccagagacaacacatatc
atttgtagtcagacagatacctccagatgtgttgatttcattaggatggataaggatcgc
ccgaagagacgcagattagttctggcggagtgggtgattgattcggtcgagggggattct
tgcttatacgaagctgattatttaccatga

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