Pseudomonas tremae: I9H09_09675
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Entry
I9H09_09675 CDS
T08237
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptre
Pseudomonas tremae
Pathway
ptre03030
DNA replication
ptre03410
Base excision repair
ptre03420
Nucleotide excision repair
ptre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I9H09_09675 (ligA)
03410 Base excision repair
I9H09_09675 (ligA)
03420 Nucleotide excision repair
I9H09_09675 (ligA)
03430 Mismatch repair
I9H09_09675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptre03032
]
I9H09_09675 (ligA)
03400 DNA repair and recombination proteins [BR:
ptre03400
]
I9H09_09675 (ligA)
Enzymes [BR:
ptre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I9H09_09675 (ligA)
DNA replication proteins [BR:
ptre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I9H09_09675 (ligA)
DNA repair and recombination proteins [BR:
ptre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I9H09_09675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I9H09_09675 (ligA)
MMR (mismatch excision repair)
DNA ligase
I9H09_09675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I9H09_09675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Bep_C_terminal
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UQB38583
LinkDB
All DBs
Position
2116434..2118797
Genome browser
AA seq
787 aa
AA seq
DB search
MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQ
RVGSAALSAFTQVRHEMPMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQYSC
EPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLEVRG
EVFMSKAGFERLNASQLEMGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQTSA
EIADTHIGVLNALKKWGMPVSRELKLADGVEECLAYYRDIGERRLTLSYEIDGVVFKVNN
LAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVAERRPDTARPVEVPQTCPVCGS
HVERTQLIKRSKGKETVFEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIGGLGDKTIEQ
LVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVG
EETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECG
LQLQDQGELGAEFAAGTTLEGLIDKLHIPSVGPGAALKLAEKFGTLEAIIGADWLDMRQA
LPEKQAKSVRDFFDDSANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLE
RMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLT
ELGVAVD
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccgtcgaaacccgaatcctcgaactgcgtgcagagctggatcagcataactat
cgctatcacgtgctggacgaacccagcatcccggatgtcgaatacgaccgcctgtttcat
gaactcaaggccctcgaggccgaaaacccgcatctggtcacgccggactcgcccactcag
cgggttggcagcgcagccttgtcggcttttacccaggtacgtcacgaaatgcccatgctc
agcctgggcaacgcgtttgaagaaaacgacctgcgtgagttcgaccgccgagtgaccgag
ggcctggatttgcctgccggtgatctgtttggcgaaggcggcaaggtgcagtacagctgc
gaacccaagctcgacggcctggcagtcagcctgctgtaccgcgacggagcgctggtgcgc
ggtgcaacgcgtggcgatggcacgacgggcgaagacatcagcgtcaatgtgcgcacggtg
cgcaatattccgctcaagctgcaaggcaagggctggccggatgtactggaagtgcgcggt
gaagtgttcatgtccaaggccggtttcgagcggctcaatgccagccagctggaaatgggt
ggcaagactttcgccaacccgcgcaatgccgctgccggcagcctccgtcagctcgactcg
aagatcaccgccaatcgtccgctggaattctgctgctatggcctgggccagacctcggcg
gaaatcgccgacacccatatcggcgtattgaatgcgctgaagaagtggggcatgccggtc
agccgcgagttgaaactggcggatggcgtcgaggaatgcctggcctattaccgcgacatc
ggcgagcgacgtctgacgctgagctacgagatcgatggcgtggtgtttaaggtcaataac
ctggctgcgcagcgcgaactgggttttcgggctcgtgagccacgttgggccattgcccac
aaattcccggccatggaagagctgaccgaactgctggacgtcgagtttcaggtggggcgc
accggtgctgttacgcccgttgcacgtctcaagccggtcaaggttgccggggtcatggtc
gccaacgcaacgctgcacaacatggacgaggtggcgcggctgggtttgatgattggcgat
accgtgatcattcgccgagccggtgacgtcatcccgcaagtggtgcaggtggttgccgag
cgtcgtccagacaccgctagaccggtcgaggtgccgcagacctgccctgtgtgtggctcg
catgtcgagcgcacgcagttgatcaagcgcagcaagggcaaggaaaccgtctttgaaggg
gcggtatatcgctgtgttggtcgtctggcctgtggcgcgcaactcaaacaggcaatcatt
cattacgtgtcgcggcgtgccatggatatcggggggctgggcgacaagaccatcgagcaa
ctggtcgatgaaaagctcattggttcacctgccgatctgtacaagcttaaatacgaacag
attatcgatcttgaaggttttgccgaaatctccagcaacaagctcctcaaggcaatcgcc
gacagcaggcagccgaccttggcacgcttcatctatgccttgggcatcccggatgtaggc
gaagagacggccaaggtgttggcgcgttcgctggcgtcgctggatcgtgtcaaacaggcg
ctgccggaagttctgacctacctgccggatgtcggcctggaagtcgcttacgagattcac
agctttttcgaggacgagcacaatcgcaacgtcattgatgcactgttgggtgaatgcggt
ctgcagcttcaggatcagggtgagttgggggccgaatttgcggccggcactactctggaa
gggctgatagacaagctgcacattccatcggtagggccgggcgctgcgctcaagctggcc
gagaagtttggcacgctggaagcaatcatcggcgccgactggctggatatgcgtcaggcg
ctgcccgagaagcaggccaagtcggtccgcgacttctttgatgacagcgcaaacgccgag
cgcgcccgcgccatcgaagcccagctcaaggactttggcatgcactggcgcagcgagaag
aaaaccgtcgagggcttaccgttggccggccagacctgggtgctgaccggctccctggag
cgcatgagtcgcgacgtcgctaaggaaaaactcgaaagcctgggtgccaaggtgtccggc
tcggtatcggcgaagacccacaccgtggtcgccggccccggcgctggttcgaaactgacc
aaagccaacgaactgggcctgaccgtgctggacgaagacgcactgctcaagcgcctgacc
gaactgggcgtggcggttgactga
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