Pseudomonas tremae: I9H09_23440
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Entry
I9H09_23440 CDS
T08237
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptre
Pseudomonas tremae
Pathway
ptre03030
DNA replication
ptre03410
Base excision repair
ptre03420
Nucleotide excision repair
ptre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I9H09_23440 (ligB)
03410 Base excision repair
I9H09_23440 (ligB)
03420 Nucleotide excision repair
I9H09_23440 (ligB)
03430 Mismatch repair
I9H09_23440 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptre03032
]
I9H09_23440 (ligB)
03400 DNA repair and recombination proteins [BR:
ptre03400
]
I9H09_23440 (ligB)
Enzymes [BR:
ptre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I9H09_23440 (ligB)
DNA replication proteins [BR:
ptre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I9H09_23440 (ligB)
DNA repair and recombination proteins [BR:
ptre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I9H09_23440 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I9H09_23440 (ligB)
MMR (mismatch excision repair)
DNA ligase
I9H09_23440 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I9H09_23440 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
RNA_ligase
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UQB36422
LinkDB
All DBs
Position
5223503..5225185
Genome browser
AA seq
560 aa
AA seq
DB search
MLPTIRLMTFALVFFLPGLGYASQCPDWSAARANNEITALQKQIAEWDDSYHRQGVSQIP
DELYDQSRLKLKVWRSCFRVSTVADNPLKTVTGPLAHPIPHTGVNKLADEKSVTAWLRGR
TDVWIQPKVDGVAVTLVYEGGRLVQAISRGDGKKGKDWTPQARLIKAVPQQLPHAEYLVL
QGELYWRLDDHIQAISGSINARSKVAGLLARRTISPQQADAIGLFVWDWPNGPADMPQRL
AGLQAQGFEDSATYTHRLENHAQASQWREHWYRNPLPFATDGVIIRQGQRPPAQRWQASA
PYWIAAWKHPYAQALAEVRKVNFNIGRSGRITPVLELKPVRLDDRTVSRISTGSLQRWQT
LDIRPGDQIAVSLAGLTIPRLDGVVARAAERVSMTIPHASDFHELSCWQATPGCESQFRA
RLIWLSGKKGLALPGVGPGTWDKLIESGQISGLLDWMTLNHTELANIPGLAERSSAKLLD
SLQTARAKPFLAWLKAIGMPPTGDAKLPDNWHDLTTRSVEQWQAEPGVGAGRSAKLRAFF
QDPHVKAMSQQLQAHGISGF
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgttgcccaccatccgcctgatgacgttcgctctggtcttttttctccccggcctcggc
tacgccagccagtgccctgactggtctgccgccagggcaaacaacgaaataaccgcactg
caaaaacaaatcgccgaatgggacgacagttaccaccggcaaggcgtatcgcagatccct
gacgaactttacgatcagtcccggctgaagctgaaggtctggcggtcgtgcttcagggtc
tcgacggtcgcagacaacccacttaaaaccgttaccggtccgcttgcccaccccatcccg
cacaccggcgtgaacaagctcgcggacgagaaaagcgtcacagcctggctcaggggccgc
accgacgtctggattcaacccaaggtcgatggggtagcggtcacgctggtctacgagggc
ggcagattggtgcaggcgatcagtcgcggtgacgggaaaaaaggtaaggactggaccccg
caagcccggttgatcaaggcagtccctcagcagttgccccacgctgaatatctcgtcctg
caaggcgagctttactggcggctggacgatcacattcaggcaatatccggcagcatcaat
gcacgcagcaaggtcgcggggctgctggcccggcggacaatcagcccgcagcaggccgac
gccatcgggcttttcgtctgggattggccgaacggccctgccgacatgcctcagaggctc
gcaggcctgcaagcacaaggcttcgaggacagcgcgacttacacgcataggctggaaaac
cacgcacaggcctcacagtggcgtgagcactggtatcgcaacccgctgccgtttgccacc
gacggcgtgatcattcgccagggtcagcgcccaccggcacagcgctggcaagccagtgcg
ccttactggattgcagcatggaagcatccctatgcccaagccctggccgaagtgcgcaag
gtcaatttcaatatcggtcgcagtggcaggatcacgccggtgctggagctgaaaccggtg
cgcctcgacgaccgcactgtcagtcgtatcagcacgggctcactgcagcgctggcagact
ctggatataaggcctggcgatcagattgccgtgagtctggccgggctgacgattcctcga
ctagacggcgtagttgcgcgcgctgccgaacgagtgagcatgaccatcccgcatgccagt
gattttcatgaactgagctgctggcaagcaacaccgggctgtgaaagtcagttccgcgcc
aggctgatatggctcagcggcaagaaggggctggcgctgccgggcgtcggtccgggaacc
tgggacaagctcattgaaagtggccagatcagcggcttgctcgattggatgacgcttaat
catactgagcttgctaacattcccggccttgccgagcgcagcagcgctaaactgctcgac
agcctgcaaacagcccgtgcaaagccgtttctggcatggctcaaggccatcggaatgccg
cccacaggtgacgcgaagctgcctgataactggcacgacctgacaacacgcagcgtcgag
caatggcaggctgaaccgggtgtcggcgcgggccggtcggcaaaactcagggcctttttt
caggacccgcacgtaaaagccatgagccagcaattgcaggcgcacggtatttcaggtttt
taa
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