Paenibacillus tritici: KDC22_30005
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Entry
KDC22_30005 CDS
T07560
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptri
Paenibacillus tritici
Pathway
ptri03030
DNA replication
ptri03410
Base excision repair
ptri03420
Nucleotide excision repair
ptri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KDC22_30005 (ligA)
03410 Base excision repair
KDC22_30005 (ligA)
03420 Nucleotide excision repair
KDC22_30005 (ligA)
03430 Mismatch repair
KDC22_30005 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptri03032
]
KDC22_30005 (ligA)
03400 DNA repair and recombination proteins [BR:
ptri03400
]
KDC22_30005 (ligA)
Enzymes [BR:
ptri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KDC22_30005 (ligA)
DNA replication proteins [BR:
ptri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KDC22_30005 (ligA)
DNA repair and recombination proteins [BR:
ptri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KDC22_30005 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KDC22_30005 (ligA)
MMR (mismatch excision repair)
DNA ligase
KDC22_30005 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KDC22_30005 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QUL54466
LinkDB
All DBs
Position
complement(6957489..6959501)
Genome browser
AA seq
670 aa
AA seq
DB search
MDIMFTMEELVAELNQYNYHYYTMDAPQISDKEYDVLYDKLVALEAESGIVLPHSPTQRV
GGELLKGFTPHRHLAPLWSLDKAQNIEQLRIWNTRVLKLVNDYNTKNPENPLPEPCYAVE
LKFDGLTLNLTYRDGVLVQAATRGNGVTGEGILAQVKTIKSVPLNIPFKEGVIEVQGEGI
MNLSVLADYNTRAAEPLKNARNGAAGALRNLNPKMTADRRLNAYFYNVGYSEGVQFADHQ
EMMDFLRSNRFKVNPYLNYFSTFDDVTEQLAEIEESRSGLDYLIDGAVIKVTDFRIREAL
GYTDKFPRWAVAYKFEAEETTTILESVSWNVGRTGKVTPLARVEAVELAGVTVQNCTLNN
VGDIERKNLKFALGTRVFIRRSNDVIPEILGKVTEESDGGEIIFPEECPACGFPLEMRGA
HLFCNNKLDCKPQIVSRITHFASRDAMDIETFSEKTAAQLHEELSVREPADLYELTFDQL
VKLERFGEKKADNLLKALEESKGRDLASFLYALGIPNTGKATTRMLADHYRSLEAVMSAT
AEELAGLPDIGGIVAESIVNYFADPFVVVSIDRMRALGVEAKAPEAPRVVSTNTYFSGKT
VVLTGSLQKMTREEAAERLEALGAKVSGSVSKKTDLVIAGEKAGSKLAKAQQLGIQVIED
EDELIRLLEM
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatattatgttcacgatggaagaactcgtagccgagcttaatcaatataactatcat
tactatacaatggatgcgccgcagatcagcgataaggaatatgatgtgctctatgataag
ctggtggcgctggaagcggagagcgggattgtattgccccattctccaacccagcgcgta
ggcggagagctgctgaagggcttcacaccgcaccgccatctggcgccgctgtggagtctc
gacaaggcgcagaacattgaacagcttcgtatctggaacacccgcgtgctgaagctcgtg
aatgattacaataccaagaacccggagaatccgctgccggagccgtgttatgcggtggag
ctgaagtttgacggcttgacccttaacctgacctaccgtgacggagtgcttgtccaggcg
gcaacgcgggggaacggtgtaacaggcgaagggattctggcacaggtgaagacgatcaaa
tcggttccgttgaacattccgttcaaggaaggcgtaattgaagtgcagggcgaggggatt
atgaacctgtctgtgctggccgactacaatacccgagcagcggagccgctgaagaatgcg
cgcaacggggcggcgggtgcactgcgtaacctgaatccgaagatgactgctgaccgcagg
ctgaatgcttacttttataatgtggggtattcggaaggggtacagttcgccgatcatcag
gagatgatggatttcctgcgcagcaaccgcttcaaggtcaatccttacctgaattacttc
agtaccttcgatgacgttaccgagcagctggcagagatcgaagagagccgttccggtctt
gattatctgatcgacggggcggttatcaaggtcactgacttccgcatccgtgaagcgctg
ggctatacagacaagttcccgcgctgggcggttgcttataaattcgaggccgaagagacc
acgaccattctggaatccgtcagctggaatgtcggccgcacaggcaaggtcactccgctc
gcgcgggtggaagctgtagagctggccggtgttactgtgcagaattgcacacttaacaat
gtgggcgatattgagcgcaagaatctgaagtttgccctggggacacgggtgttcatccgc
cgctccaatgatgtcatcccggagattctgggtaaggtgacagaggagagcgacggcggg
gagattattttccctgaggaatgcccggcctgcgggttcccgctggagatgcgtggtgcc
catctgttctgcaacaacaagcttgactgtaagccgcagattgtcagccggattacgcat
tttgcgtccagagatgccatggatattgagacgtttagcgagaagaccgccgctcaactg
catgaggagcttagtgtacgggagcctgcggatctgtacgaattaaccttcgaccagctg
gtgaagctcgaacgcttcggggagaagaaggcggacaatctgctgaaggcgctggaagag
agcaaaggccgggacctggcctccttcctgtatgccctcggtattcctaataccggcaaa
gccaccaccagaatgctggccgatcactaccgcagcctggaagccgtgatgtccgcaaca
gcggaagaattggccggtctgccggatatcggcgggattgtggcggagagcattgtgaat
tattttgccgacccgttcgtggtggtcagcattgaccgtatgcgggcgctcggtgtagaa
gccaaggctcccgaagccccgcgtgtagtcagcacgaatacctatttcagcggcaaaaca
gtcgtcctgaccggttccctgcaaaaaatgacccgcgaggaagccgccgaacgtctggag
gcactaggggctaaggtatccggcagcgtctccaagaagaccgacctggtgattgccgga
gagaaggcaggcagcaagctggccaaagcccagcagctcggaattcaagtcattgaggat
gaagatgagctgatccggttactggagatgtaa
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integrated database retrieval system
