Pseudomonas triclosanedens: OU419_18625
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Entry
OU419_18625 CDS
T09689
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptrl
Pseudomonas triclosanedens
Pathway
ptrl03030
DNA replication
ptrl03410
Base excision repair
ptrl03420
Nucleotide excision repair
ptrl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptrl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OU419_18625 (ligA)
03410 Base excision repair
OU419_18625 (ligA)
03420 Nucleotide excision repair
OU419_18625 (ligA)
03430 Mismatch repair
OU419_18625 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptrl03032
]
OU419_18625 (ligA)
03400 DNA repair and recombination proteins [BR:
ptrl03400
]
OU419_18625 (ligA)
Enzymes [BR:
ptrl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OU419_18625 (ligA)
DNA replication proteins [BR:
ptrl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OU419_18625 (ligA)
DNA repair and recombination proteins [BR:
ptrl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OU419_18625 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OU419_18625 (ligA)
MMR (mismatch excision repair)
DNA ligase
OU419_18625 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OU419_18625 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WAI47783
LinkDB
All DBs
Position
complement(4023542..4025929)
Genome browser
AA seq
795 aa
AA seq
DB search
MTDSQTAAERIAQLRSELDDHNYRYYVLDQPSVPDAEYDRLFRELKALEAEHPELITPES
PTQRVGGAAASAFGEVRHEVPMLSLGNAFEEQDLSDFDRRVREGLADQLPSSDLFGGGAE
VEYSCEPKLDGLAVSLLYENGVLTRGATRGDGTTGEDISANVRTIRNVPLRLQGKGWPAV
LEVRGEVFMSKAGFEALNERRVEAGGKTFANPRNAAAGSLRQLDSRITASRPLEFCAYGF
GRVEGGGLPGTQVGILEALKGWGVPISRELKLVRGVEECRAYYRDIGNRRDSLAYEIDGV
VFKVNRIDFQRELGFRAREPRWAIAHKFPAREELTELLDVEFQVGRTGAVTPVARLKPVQ
VAGVTVSNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVMQVVAERRPADARPVEIPTQ
CPVCGSQVERTQLVKRSKGKESLSEGAIYRCVGRLFCQAQLKQAIIHFVSRRAMDIDGLG
DKIVEQLVDRGLVKSPADLYTLTYEQVIELEGFAEVSTRNLLGAIADSRKPALARFVFAL
GIPDVGEETAKLLARSLGSLARIQKALPEVLTYLPDVGAEVAYEIHNFFGDEHNCSVIAQ
LLERGVELQEEGEVSAEFAAVATLAGFIDKLNIPFIAATGAEKLADRAGSLEALITLSQD
WLDLSTLKGVNEKARQSVREYFADAARVERARAVEAQLAEFGMHWRSERKVVEGLPLAGQ
TWVLTGTLEAMSRDIAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKAQELGVAVMD
EEQLLKLLADHGLGA
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgaccgactcccagaccgctgccgaacgcatcgcccagttgcgcagcgagctagacgac
cataactaccgctactacgtgctcgatcagcccagcgtgccggacgccgaatacgatcgc
ctgttccgcgaactcaaggcgttggaagccgagcatcctgaactgatcactcccgagtcg
ccgacccagcgcgtcggcggcgcggccgcttctgcattcggcgaggtccgccacgaagtg
ccgatgctcagcctgggcaacgcgttcgaggagcaggacctgagcgatttcgaccgtcgc
gtgcgcgaggggctggccgatcagttgccttcctccgatctgtttggcggcggtgccgag
gtggagtacagctgcgagccgaagctggacggcctggcggtaagcctgctgtacgagaac
ggcgtgctgacccgtggcgccacccgtggcgacggcactaccggcgaagacatcagcgcc
aacgtgcgcaccatccgcaatgtgccgctgcgcctgcagggcaagggctggccggcggtg
ctggaagtgcgtggcgaggtgttcatgtccaaggctggcttcgaggcgctcaacgagcgg
cgggtggaagccggcggcaagaccttcgccaacccgcgcaacgccgctgctggcagcttg
cgtcaactggactccaggatcaccgccagtcgtccgctggagttctgtgcctatggtttt
ggccgagtcgaggggggcggcttgcccggtacccaggtgggaatcctcgaagcgctgaag
gggtggggcgttcctatcagccgcgagttgaagctggtccgcggcgtcgaggaatgccgg
gcctactatcgggacatcggcaatcgtcgtgacagcctggcctacgagattgacggcgtg
gtgttcaaggtcaatcgcatcgacttccagcgcgagctgggcttccgcgcccgtgagccg
cgctgggcgatcgcccacaagttccctgcgcgcgaggaactgaccgagctgctagacgtg
gagttccaggttggccgcaccggtgcggtgacgccggtggcgcgtctgaagccggtgcag
gtggcgggcgtgaccgtttccaatgcgaccctgcacaacatggacgaggtcgcacgcctg
ggcctgatgattggcgataccgtgatcatccgccgcgccggcgatgtgattccgcaagtg
atgcaggtggtggccgagcgccgtccggcggatgcgcgcccggtggaaatcccgacccag
tgcccggtgtgcggctcgcaggtggagcgcacccaactggtcaagcgcagcaagggcaag
gaatcgctcagcgagggagccatctaccgttgcgtcggacggctgttctgccaggcgcag
ctcaagcaggcgatcattcatttcgtttcgcggcgggcgatggacattgacggcctcggc
gacaagatcgtcgagcaactggtggacagggggctggtgaagtctccggcggacctctac
accctgacctacgagcaggtgatcgagctggaaggcttcgccgaggtctccacgcgcaac
ctgctgggtgcaattgccgacagccgcaagcctgccctggcgcgcttcgttttcgccctc
ggtattcccgatgtgggcgaggaaaccgccaagctgctggcccggtcgctcggttcgctg
gcgcgcatccagaaggctttgccggaggtgctgacctatctgccggacgtgggcgccgag
gtggcttacgagatccacaacttcttcggtgacgagcacaactgcagcgtgatcgcgcag
ttgctggagcgcggcgtcgagttgcaggaggagggcgaggtgtcggccgagttcgccgcc
gttgcgacgctggcgggcttcatcgacaagctgaacattccctttatcgccgccaccggc
gccgagaagttggctgaccgagccggcagcctcgaagcactgatcaccctcagccaggac
tggctggacctcagcaccctgaaaggggtgaacgaaaaggccaggcagtcggtgcgcgag
tatttcgcggatgccgcccgcgtcgagcgggcccgcgccgtcgaggcgcagctggccgag
ttcggcatgcactggcgcagtgagcgcaaggtggtcgaaggcctgccgctggccggccag
acctgggtgcttaccggcacgctggaggccatgagccgcgatatcgccaaggacaagctg
gaaagcctgggcgccaaggtggctggctccgtgtcggccaagacccattgcgtggtcgca
gggcctggtgctggttcgaaactggccaaggctcaggaactcggcgtcgcggtaatggac
gaagagcagttgctcaagctgctggccgaccacggactgggtgcctga
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