Polynucleobacter tropicus: DCO17_07585
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Entry
DCO17_07585 CDS
T08318
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptrp
Polynucleobacter tropicus
Pathway
ptrp03030
DNA replication
ptrp03410
Base excision repair
ptrp03420
Nucleotide excision repair
ptrp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptrp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DCO17_07585 (ligA)
03410 Base excision repair
DCO17_07585 (ligA)
03420 Nucleotide excision repair
DCO17_07585 (ligA)
03430 Mismatch repair
DCO17_07585 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptrp03032
]
DCO17_07585 (ligA)
03400 DNA repair and recombination proteins [BR:
ptrp03400
]
DCO17_07585 (ligA)
Enzymes [BR:
ptrp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DCO17_07585 (ligA)
DNA replication proteins [BR:
ptrp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DCO17_07585 (ligA)
DNA repair and recombination proteins [BR:
ptrp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DCO17_07585 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DCO17_07585 (ligA)
MMR (mismatch excision repair)
DNA ligase
DCO17_07585 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DCO17_07585 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QKM65107
UniProt:
A0A6M9Q1I2
LinkDB
All DBs
Position
complement(1478079..1480094)
Genome browser
AA seq
671 aa
AA seq
DB search
MSSNSPTNLAERYSFLQMELARLEHAYYVLDNPLLPDIEYDKLYRELLEIEAAHPEWVTP
ESLSQRVGGVALKEFDSVTHEVPMLSLNNAFEEAELVAFDRRCREGLHTDHVAYAGELKF
DGLAISLRYENGSLVRAATRGDGASGEDVTANIKTIRAIPLRLAGKDIPKVLEIRGEVFM
YLKDFQKMNQQAAALGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPQSWL
PKTHEELLNKYVELGLPVCSERKVLHSVQEILDFYNAIGAKRDALPYDIDGVVYKVNSFA
EQAKLGYVSRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTVTN
ATLHNEDEVRRKDVRIGDTVSVRRAGDVIPEVVSVIKDRRPSDTKEFQMPTRCPVCDSHI
ERLADEAVARCSGGLFCGAQRKQALIHFAHRRAMDIEGLGEKIVDQLVDQNLVRTPADLY
RLGFTALANLERMGEKSADNLIQAINQSRNTTLARFIFALGIRHVGETTAKDLANHFQSM
HALMDANMEELLSVKDVGPVVADSILSFMEEAHNREVIEQLLASGMQLAVEEKVISAAVA
GKTFVLTGTFPTMTRDEAKDLLEKAGAKVAGSVSKKTDYVVAGADAGSKLTKAEELGVPV
IDEAGMLELLK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtctaatagtccgacaaacttagcggagcgttactcatttctacaaatggaattg
gctcgcttagagcatgcctactatgttcttgataatccattattgccagatatcgaatat
gacaagctctatcgcgagttattagaaattgaagcagctcatcctgaatgggtcacccct
gaatccttatctcagcgtgttgggggtgttgcattaaaagagtttgactcggtaacgcat
gaagtaccaatgctatctctcaataatgcatttgaagaagcagaattagttgcatttgat
cgtcgctgtcgtgagggtttgcatactgatcacgttgcttatgctggcgagctaaaattt
gatggccttgcaatttctttgcgttatgagaatggctctttggtacgtgccgccactcgt
ggggatggtgctagcggtgaggatgtcactgccaatatcaaaacgattcgtgctattcca
ttgagattagctggcaaagacattcctaaagtcttagagattcgtggtgaggtctttatg
tacctcaaagattttcaaaaaatgaatcaacaggctgctgctttgggggaaaaagaattt
gcaaatcctcgtaatgcagctgcaggtagtttgcgccagttggattccaagatcacggct
aaacgtccactttctttctttgcatatggcctaggtgcacttgagccccaatcatggctt
cccaagacgcatgaagaattactaaataaatatgttgaattgggattgcctgtttgctct
gagcgcaaagtattgcactccgttcaggagatcctagatttctacaatgccattggggct
aagcgggatgcattgccatatgacattgacggcgttgtctataaggtgaattcatttgcc
gagcaagccaagttgggctatgtctccagagcccctcgatttgcattagcacataaatat
cctgcccaagaggctctcacaacggttttgggaatagatgttcaagtggggcgcacaggc
gcgattactccagtagcacgcctagctcccgttgaagtaggtggcgtcaccgtgactaat
gccacgcttcacaatgaagatgaggttagacgtaaggatgttcggattggcgatacggtt
tctgtaagacgggcgggcgatgtaattcctgaagtggtatcggttattaaagaccgtcgc
cctagtgataccaaagagtttcaaatgccaacccgctgtccagtatgtgattctcatatt
gagcgtttggcggatgaagctgttgcgcgttgtagcggcggcttattttgcggcgctcag
cgcaaacaagctctgattcactttgcccacagaagggctatggatatcgaaggcttgggc
gaaaagattgtagatcaattggttgatcaaaatttggtgagaacgccagcagatctctat
cgtttgggttttaccgctttagcaaatcttgagcgcatgggtgaaaagtctgccgacaat
ctcatacaggcaattaatcagtctcgaaatacaactctagcgagatttatcttcgccttg
ggtattcgtcatgttggtgaaactacagctaaagatttggcgaatcatttccaatcaatg
catgcattaatggatgcgaatatggaagagttgctcagcgttaaagacgttggccctgta
gtcgctgactccattctgagcttcatggaagaggcccacaatcgtgaagtaattgagcag
cttttggcttcaggcatgcagcttgcggtagaagaaaaagtgatcagcgccgctgtggct
ggaaagacctttgttctaacgggtacattccccaccatgactcgtgatgaagcaaaagat
ctgcttgagaaagcgggcgcaaaagttgctggatcagtgtcaaagaaaacagattatgta
gttgcaggcgcggatgctggaagcaaactcactaaagcagaagaattaggcgtgcccgtc
attgatgaggcgggcatgctggaattgctgaagtaa
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