Pyrenophora tritici-repentis: 6347056
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Entry
6347056 CDS
T10215
Symbol
PtrM4_032310
Name
(RefSeq) LSM1, Small nuclear ribonucleoprotein (snRNP) protein
KO
K11086
small nuclear ribonucleoprotein B and B'
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6347056 (PtrM4_032310)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6347056 (PtrM4_032310)
03041 Spliceosome [BR:
ptrr03041
]
6347056 (PtrM4_032310)
03032 DNA replication proteins [BR:
ptrr03032
]
6347056 (PtrM4_032310)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
6347056 (PtrM4_032310)
Spliceosome [BR:
ptrr03041
]
Complex A
U1 snRNP components
Sm proteins
6347056 (PtrM4_032310)
U2 snRNP components
6347056 (PtrM4_032310)
Complex B
U1 snRNP components
6347056 (PtrM4_032310)
U4/U6.U5 tri-snRNP components
6347056 (PtrM4_032310)
Complex C
U2 snRNP components
6347056 (PtrM4_032310)
DNA replication proteins [BR:
ptrr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
6347056 (PtrM4_032310)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
6347056
NCBI-ProteinID:
XP_065966206
LinkDB
All DBs
Position
1:<8369149..>8370018
Genome browser
AA seq
212 aa
AA seq
DB search
MSGAANRQGKMQNLINYRMKVTLQDGRQMVGQMLAFDKHMNLVLADTEEFRRTRRRGKAA
PGAAQQVTETEERRAIGLTIIRGAHVISLSVDGPPPADPAARLGASGTGPSTTAALAAGP
GVARPAGRGLPVGLTGPAPGVGGPGPGFGGGFPGAPGGFGGPPGFPGRGGPPGGPPGFPP
AGGPPGAFGGPPGFGGPPGFPGRGGPPGFGGR
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcgccgcaaacagacagggaaagatgcaaaatctaatcaactaccgcatgaaa
gttacgctgcaagatggcaggcagatggtcgggcagatgctcgcattcgacaagcacatg
aacctggttctcgccgacacagaagagttccgacgtacgcgaagaaggggcaaagctgca
ccgggcgcagcccagcaagtcaccgagaccgaggaacgacgcgccattggcctcaccatc
attcgcggcgcccacgtcatttcgctgtcagttgatggcccgccgcccgccgaccccgcc
gcgcgactcggagcaagtggcacaggtccatcgaccactgcagctctggccgcagggccc
ggtgtagctcgccctgctggacgtggtcttccagttggacttactggaccagctcctggt
gtcggaggacctggccctggatttggaggtggtttcccaggcgcccctggaggttttgga
ggcccgcccggcttcccaggtcgcggtggtcccccaggtggtccgcccggttttccccct
gctggtggtcctcctggagccttcggaggccctccaggatttggcggaccgcccggtttc
cctgggcgcggcggaccccctggtttcggtggcagatag
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