Pyrenophora tritici-repentis: 6348053
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Entry
6348053 CDS
T10215
Symbol
PtrM4_086860
Name
(RefSeq) ABC-type uncharacterized transport system, ATPase component
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6348053 (PtrM4_086860)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6348053 (PtrM4_086860)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
6348053 (PtrM4_086860)
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
AAA_29
AAA_15
AAA_23
AAA_25
DUF3584
AAA
PduV-EutP
AAA_28
ORC-CDC6-like
SRP54
FtsK_SpoIIIE
AAA_22
RsgA_GTPase
Zeta_toxin
Arf
AAA_13
Dynamin_N
Motif
Other DBs
NCBI-GeneID:
6348053
NCBI-ProteinID:
XP_065963675
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All DBs
Position
3:3424872..3425783
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AA seq
287 aa
AA seq
DB search
MSGTAPNKDIAPSIDVKNLSYLFPDGSNGLKDVLLDLPPGSRTLLIGANGAGKTTLLRLL
SGKRMAPSGTVHIAGVDPFKMGLEGVTYLGLEWVLNPIVRTDIDVPTLLSSIGGDYYTER
RDELIRILDIDLSWRMHAVSDGERRRVQLAMGLLRPWTILLLDEITVDLDLLSRSNFLNF
LKKETQERPCTIVYATHILDNLATWPTHLVHMSLGKVKKWGSTEDMGVKVEQSERMYTGN
SQLGELVLKWLQEDLNERGPRNGKGEGMAYQSLDGKGGYGAEKRTEK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaacagcccccaataaagatattgcgccgtcaatcgatgtcaagaacctcagc
tatctctttccagacggctcgaatggattaaaggacgtgttgctggatcttcctccggga
agtaggacccttctgattggagctaatggcgcgggtaaaactacgctgctccgtctcctc
tccggaaagcgcatggcaccctctggcaccgtccacattgcgggcgttgacccattcaag
atgggccttgaaggtgtcacctatcttggcctcgaatgggtgctcaaccccatcgtgcgt
acagacattgacgttcccacgctcctctcatccatcggcggcgattactacaccgagcgt
cgcgacgagctcatacgcatcctggacattgatttgagctggcgcatgcacgccgtctca
gacggtgagaggcgacgagtacaactagcaatgggtctcctacggccatggactatcctg
ctgctggacgagattaccgtcgacctggatctgctatcgcgcagcaacttcctcaacttc
ctgaagaaggaaacgcaggaacgcccatgcaccatcgtgtatgcgacacatatcctggac
aacctcgctacgtggccgacgcatctcgtccacatgagtctgggcaaggtcaagaagtgg
ggcagcaccgaggacatgggcgttaaggttgaacagagcgagaggatgtacacgggaaac
agccaactgggagaattggtactgaaatggctgcaagaggatctgaatgagagaggacca
aggaatggaaagggcgagggcatggcgtatcagagcctggacggaaagggtggctatggt
gcggagaagaggaccgaaaagtag
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