Pyrenophora tritici-repentis: 6348216
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Entry
6348216 CDS
T10215
Symbol
PtrM4_085100
Name
(RefSeq) LSM1, Small nuclear ribonucleoprotein (snRNP) protein
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03018
RNA degradation
ptrr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
6348216 (PtrM4_085100)
09123 Folding, sorting and degradation
03018 RNA degradation
6348216 (PtrM4_085100)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptrr03019
]
6348216 (PtrM4_085100)
03041 Spliceosome [BR:
ptrr03041
]
6348216 (PtrM4_085100)
Messenger RNA biogenesis [BR:
ptrr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
6348216 (PtrM4_085100)
mRNA degradation factors
5'-3' decay
Lsm complex
6348216 (PtrM4_085100)
Spliceosome [BR:
ptrr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
6348216 (PtrM4_085100)
Complex C
U2 snRNP components
6348216 (PtrM4_085100)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
6348216
NCBI-ProteinID:
XP_065963597
LinkDB
All DBs
Position
3:<2949999..>2950401
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AA seq
96 aa
AA seq
DB search
MEEKEETNEPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYMAEEE
DDDQEPRVRTVKKQSEMLFVRGDSVVLIAPAEGTSQ
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaaagaagaaaccaacgagcctctcgatcttgtgcgcctctgcattgacgaa
gttgtcattgtgaaattgcgcggtgaccgtgagctaaaaggaaggctccatgcatacgac
tcgcattgtaacctcgttcttggagacgttgaagaaacgatatacatggccgaagaggaa
gacgacgaccaggagccccgtgtacggacagtcaagaagcagagtgagatgctgtttgta
agaggcgattcagtagtcctcattgcaccggcagaaggaacttcgcaataa
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