Pyrenophora tritici-repentis: 6348281
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Entry
6348281 CDS
T10215
Symbol
PtrM4_084240
Name
(RefSeq) CDC9, ATP-dependent DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
6348281 (PtrM4_084240)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptrr03400
]
6348281 (PtrM4_084240)
Enzymes [BR:
ptrr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
6348281 (PtrM4_084240)
DNA repair and recombination proteins [BR:
ptrr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
6348281 (PtrM4_084240)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_N
DNA_ligase_A_M
BRCT_2
RNA_ligase
DNA_ligase_A_C
LIG3_BRCT
BRCT
PTCB-BRCT
Bac_globin
Motif
Other DBs
NCBI-GeneID:
6348281
NCBI-ProteinID:
XP_001940314
UniProt:
B2WJ23
LinkDB
All DBs
Position
3:2728571..2731537
Genome browser
AA seq
988 aa
AA seq
DB search
MAEDTPMPDADAIKENTLMYGHDDDLDDKYPTRPINLHKTLPFHTLFTDLFNPLMETQKK
KQSVGARRRVGPHGHANMSPHEAKRNIIERFIANWRKQVGNDFYPAMRLIIPEKDRDRPM
YGLKEKAIAKVLIKLTRIGKDSDDAKHMLNWKLPGQLNKASASTAGDFAGRCYEILSTRQ
LKTVYSDMTIAEVNNALDKLSQVGAEDEQVKIFQRFYRRMNAEEMTWLIRMILRQMKIGA
TEKTFLDIWHPDAETLFNISSNLRRVCWELFDTKLRLEGEDTGLSLMQCFQPQLAQFQDK
VGSFEKLVTRFKGDENDDTFWIEEKLDGERMQLHMMEDPDAPGGKSFGFWSRKAKDYAYL
YGRHFDGDEAGALTRFITDAFGENVRNIILDGEMITWDMETDHIVGFGTLKTAALSEKEN
KTNKNTGQRPLFRVFDCVYLNDKLLTQYTLRDRRRALESAVKGVPRRLEVHPYIEARSHT
EIEPALRKVIAESSEGLVLKNPRSMYCLSQRNNDWMKVKPEYMSEFGESLDCVVVGGYFG
SGHRGGVHSSFLCALLTDKDAKPGDPKYEHCWSFFKVGGGFSREDYAAIRGRTEGKWHNW
DRRRPPLFIELGGHEQNRQHERPDQWIRPSESVVLECKAASVESSDKFRSTLTLRFPRFK
LLRVDKRWDQALSVQEFLDVKSRAEKEKSEKEKEFKIEQSRRKKARTAKKPLTVVSDDAI
KTPYAGPASKVFEGLAFYIMTEQVYPTKKSKADLEALVKANGGRLVQRDSTAKDLVIVAD
KRLIKVASLEKRGTNNVVKPAWLQDCIMQNERDAGAPPYLLPFEPNRHMYYLHDDDQMDY
EANLDDNGDSYARDIADMEEMRSLLDGMETPKTTFSRDGFLEQLEGHGEDFSQFKTYMFR
NVKVKFSAEVGLELRAKLAKNYVRFGGGQIVGDGDEEDVTHVVVADGQTSAAKGKAKVSG
LARVVGLGWIEKCWEEGTRVDEERFQWG
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagataccccaatgcccgatgcggacgcgattaaggagaatactctcatgtac
ggccatgatgacgacctcgatgataaatacccgaccaggccaataaacctacacaaaaca
ttgccgttccacacactattcactgacctcttcaatccgctcatggagacgcagaagaag
aagcagtcagtgggggctcgtcggcgagttggtccacacggacacgccaacatgtcaccc
catgaagccaagcggaacatcattgaaaggttcatcgcaaattggcggaaacaggtcggc
aacgacttctacccggcaatgcgactcatcatacccgagaaagaccgtgatcgccccatg
tacggcctgaaagagaaggcaattgcaaaggtgttgatcaaactcaccagaatcggcaag
gactcggatgatgccaaacacatgctcaattggaaactgcctggacaactcaacaaggcc
tcagcttccacagcaggtgactttgcagggaggtgctatgagattctgtcaacgcgacaa
ctcaaaaccgtgtacagcgacatgacaatcgcggaggtcaacaatgcactggataagctg
tcgcaagttggtgccgaagatgagcaggtcaagattttccagagattctatcggaggatg
aatgctgaagagatgacttggctgatccgcatgattttgcgtcagatgaagattggtgcg
acggagaagacgtttctcgacatatggcatccagatgcagaaacactcttcaacatatca
tcaaacctccgacgtgtgtgttgggagctcttcgacactaagcttcgattagaaggcgaa
gacactggtctcagtctgatgcagtgttttcaaccacagttggctcagttccaagacaag
gttggctctttcgaaaagcttgtcacgagattcaagggagacgagaatgatgataccttc
tggattgaggagaagctcgacggggagagaatgcagctacatatgatggaggatccagat
gccccaggcgggaaatcgttcggcttctggtcacgcaaggcaaaggactacgcatattta
tatggtcgacattttgacggcgacgaggctggtgcactgacacgcttcatcaccgatgcg
ttcggggagaatgtcaggaacatcatcttggacggcgaaatgatcacatgggatatggag
actgaccatattgttggctttggcacactcaaaacggcagccttgtctgaaaaggagaac
aaaacgaacaaaaatactggccaacggccgctgttccgagtatttgactgcgtatatctc
aacgacaaactactcacacagtatacattacgtgatcgccggcgtgctctcgaaagtgct
gtcaaaggtgtgcctcgaagattggaagttcatccatacattgaagcacgctcgcatacc
gagattgagccagcattgcgcaaggtcatcgcggaatcctccgaaggccttgtactcaag
aacccccgttcaatgtactgcctcagccagcgcaacaacgactggatgaaggtcaagcca
gaatatatgtcagagtttggtgaatcgctcgattgtgtagttgtcggcggatacttcgga
tctggtcatcgcggcggtgtgcactcatccttcctatgcgcattactaacagacaaggac
gcaaagccgggtgatccgaaatacgagcattgttggtcattttttaaagtcgggggcgga
ttcagtcgcgaggactatgctgccatacgaggccgaacagaaggaaaatggcacaattgg
gatcgtcgacgaccacctctcttcatcgagctgggcggccatgaacaaaatcgtcaacac
gagcggccagaccaatggattcgaccgagcgaatcagtggtcctagaatgtaaagccgcc
agcgtagaaagcagcgacaagttccgctccacgctaaccctccgcttcccacgtttcaag
ctcctccgcgtagacaagcgctgggaccaagcactctcagtccaagaattcctcgatgtc
aaatcccgagcagagaaagagaagtcggagaaagagaaagagttcaaaattgaacagtcc
cgtcgcaaaaaagctcgcacagctaagaaaccgcttaccgtagttagcgacgatgcaatt
aaaaccccttacgcaggcccagcatccaaagtcttcgaaggcctagccttttacataatg
accgagcaagtctacccaaccaagaaatcaaaagcagacctggaagcactcgttaaagca
aatgggggaagacttgtccagcgcgattccacggccaaagaccttgtcatcgttgcagac
aagcgactcatcaaagttgcttctcttgagaagcgtggcacgaataatgttgtcaagcca
gcttggctacaggactgcataatgcaaaacgaacgagatgctggggcacctccttacctc
ctcccttttgaacctaacagacacatgtactacctgcatgacgatgaccaaatggactac
gaagccaatcttgatgataacggggactcgtatgcacgcgatatcgctgatatggaggaa
atgcggagcttgctggatgggatggaaaccccgaagactacatttagtcgagatgggttt
ttagagcaacttgaggggcatggggaggacttttcgcagttcaaaacgtacatgtttcgg
aacgtcaaggtgaagttctctgcggaagtggggttggagctgagagcaaaactagcaaag
aactatgtgaggtttggaggcgggcagattgtaggtgatggagatgaagaggatgtaacg
catgttgttgtagcagatggacaaacttcggcagcaaaggggaaagcgaaggtcagtggc
cttgcccgcgtagtcggattgggatggatcgaaaagtgctgggaagaagggactcgtgtc
gacgaggagagatttcaatggggttga
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