Pyrenophora tritici-repentis: 6349273
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Entry
6349273 CDS
T10215
Symbol
PtrM4_132580
Name
(RefSeq) CDC9, ATP-dependent DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ptrr Pyrenophora tritici-repentis
Pathway
ptrr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
6349273 (PtrM4_132580)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptrr03400
]
6349273 (PtrM4_132580)
Enzymes [BR:
ptrr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
6349273 (PtrM4_132580)
DNA repair and recombination proteins [BR:
ptrr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
6349273 (PtrM4_132580)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
Motif
Other DBs
NCBI-GeneID:
6349273
NCBI-ProteinID:
XP_001941292
UniProt:
A0A2W1E9E3
B2WLV1
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All DBs
Position
7:2223758..2226023
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AA seq
736 aa
AA seq
DB search
MKKWDGTWDNRKTGFSLERIDRLLVQLASRNRFSNENIRRKRNYEFETDTELWFIFRRLK
SWEAKWLVRILLRNHCTIELDEKYVFGCYHFLLPELLMFQNDFDTVFGMLKGELSCYPPA
PEPSEQMAMRIEAAQKLKPVVGLVGNGAWAAEVKYDGEYCEIHVDLDNAEHPIRIFSKNG
KDATADRRPLHDIIRKALRIGRPDCLFKKKCIVLGEMVVYSDREKKIMPFSKIRKHVSRS
GSFLGTLQDDVPHEWEHLMIVFFDILVLDDQPILRHCLQERRDVLRNLVHSVPGRSMRSN
WSLLSSKTGEGITDLKQAFVRTLAERQEGLVLKPLHEPYFPLLLEQGSRQAGFFIKMKKD
SLGDMGGERDLGDFAVVGASFDAQVAAKTDVKPLHWTHFHLGCCINTDAVERTGAKPRFK
VVATLSLEKCIPKADVKWLNTQGYVRQGTLQEDGSTREFDIVHSKSFDRRMAAVFKKPFV
AEILGGGSEQVQNESFEMLRHPRIRKIHSDRTWEDCVTMADLERLAEEKWTVPDADKLDG
HARDIALYAKKYIREMGGSQLATTDSTTEETTQCTTPRYSKDSPRLPLPSNSVVQETPPQ
YTSSPVFTTHVSAAGSTQAQGIRASRLPSSFDQGQEQKENVIYNLLPAPFLPTPGSTGEE
SGDAVAQGQKRSADQFVSPPKTKRIKVQRPLQPVSGNTDVRSFQVGYNEEERVLHVWTGG
GVKVEVQERAFGKRKE
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatgggacggcacttgggacaaccgaaagactgggttttcccttgaacgcatc
gatcgattgctcgtacagctagcgagcaggaataggttttccaatgaaaatatccggaga
aaacgcaattacgagtttgagactgatacagaactgtggttcatctttagaagactcaag
tcctgggaagcaaagtggttggtccgcatacttctacgaaatcactgcaccatcgaactt
gacgaaaagtacgtttttggatgctatcacttccttctaccggaattgttgatgttccaa
aacgacttcgacactgtctttggtatgctgaaaggggaactgagttgttacccgccagca
ccagagccttccgagcaaatggccatgcgcatcgaggcagcacagaagctgaagcctgtc
gttggtctcgtcggcaacggcgcttgggctgccgaagtaaagtacgatggcgagtactgc
gagattcacgtggatctggacaatgcagaacatccgattcgcatcttctccaaaaacggc
aaagacgcaacggcggatcgtcgacctctgcatgacatcatccgaaaagctctgcgaatc
ggtcgccctgattgcctgttcaagaagaagtgcatcgttcttggcgagatggtagtgtat
agcgatcgagaaaagaagatcatgcccttctccaaaattcgcaagcacgtctcacgatcg
gggtccttcctcggtacactccaagacgacgtgccgcatgaatgggaacatctcatgatc
gtattcttcgatatcctcgtcctagacgatcagcccattctacgtcactgcctccaagag
cgtcgagacgtcctccgcaaccttgttcactccgtccccggtcggtcaatgcgatcaaac
tggagcttactgtcgtctaagacaggggagggtataacagaccttaaacaggcattcgtc
cggacacttgccgaacgccaagaaggccttgtcttgaaaccgctccacgaaccctacttt
cctctattgttagagcagggatctcgtcaagcaggtttcttcatcaagatgaaaaaggac
tccttgggagacatgggcggcgagcgtgacttgggggattttgccgtcgttggggctagc
ttcgatgcgcaagttgccgcaaagactgatgtcaagccgttacattggacccattttcac
ctcggttgctgtatcaacacagatgcagtggaacgtaccggcgccaagccgaggttcaag
gtcgttgcgactctgagtcttgaaaagtgtattccaaaggccgatgtcaagtggttgaat
acacaaggatatgtccgccagggtaccttgcaggaagatggatcaacacgcgagttcgat
attgttcactccaaaagtttcgatcgacgtatggcagccgtgttcaagaaaccgttcgta
gcagagatacttggtggcggctccgaacaggttcaaaatgagtcatttgagatgctgcgc
catcctcgtatacgaaagatacacagcgaccgaacctgggaagactgcgtaaccatggcc
gacctagagcgtctcgccgaagagaaatggacggttcccgatgcggacaaactagacggc
cacgcaagagacattgccttgtacgctaagaagtacatccgggagatgggtggttcacaa
ctcgcgacaaccgactccaccactgaagaaacaacccagtgtaccaccccccgctactcc
aaagattcaccacgccttccattaccaagcaactcagtagtccaagagacaccaccacaa
tacacatccagccctgtgttcacaacccatgtatccgcagcgggtagcacacaagcccag
ggtatccgggcatcgcgactccccagttctttcgaccagggccaggaacaaaaagaaaat
gttatctacaatcttctacccgcgccctttttaccaacgccgggttctactggggaagaa
agcggtgatgccgtagcacaaggtcagaaaagaagtgctgaccaatttgtcagtccgccg
aagacaaagcggataaaggtccagcgcccgctgcagccagtgagtgggaatacggatgtg
agaagcttccaggttgggtataatgaggaggagagggtcttgcatgtttggacgggggga
ggggtgaaggttgaggtccaggaaagggcttttgggaagaggaaggagtag
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