Pseudomonas tritici: HU722_0021620
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Entry
HU722_0021620 CDS
T07594
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptrt
Pseudomonas tritici
Pathway
ptrt03030
DNA replication
ptrt03410
Base excision repair
ptrt03420
Nucleotide excision repair
ptrt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU722_0021620 (ligA)
03410 Base excision repair
HU722_0021620 (ligA)
03420 Nucleotide excision repair
HU722_0021620 (ligA)
03430 Mismatch repair
HU722_0021620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptrt03032
]
HU722_0021620 (ligA)
03400 DNA repair and recombination proteins [BR:
ptrt03400
]
HU722_0021620 (ligA)
Enzymes [BR:
ptrt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HU722_0021620 (ligA)
DNA replication proteins [BR:
ptrt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HU722_0021620 (ligA)
DNA repair and recombination proteins [BR:
ptrt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HU722_0021620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU722_0021620 (ligA)
MMR (mismatch excision repair)
DNA ligase
HU722_0021620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HU722_0021620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Tla3_C
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QXH82566
UniProt:
A0A8H9YIN9
LinkDB
All DBs
Position
complement(4772319..4774676)
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAPTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPELITRDSPTQ
RVGSAALSAFTQVKHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPATLEVRG
EVFMSKAGFERLNGSQLDVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDIS
DSHIGNLQQLKQWGMPISHELKLAKGIQDCLEYYRDIGERRNSLPYEIDGVVFKVNSIAS
QRELGFRAREPRWAIAHKFPALEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNA
TLHNMDEVARLGVMIGDTVIIRRAGDVIPQVVSVVLERRPETARPVPIPERCPVCGSHVE
RTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVD
EKLIGSPADLYKLKYEQIIDLEGFADISSKKLISAIENSKTPTLARFIYALGIPDVGEET
AKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPDECGL
QLQEQGDLSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFGTLEGVIKADWLDMRQAL
PEKQAKAVRDFFDNQGNANRALAIEQQLKDFGMHWLSEKKVVEGLPEAGHTWVLTGSLEL
MSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLAK
HNITV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccctacccgcatcctcgaactgcgcgctgaactggatcagcacaactac
cgttaccacgtcctcgacgagccaagcattccggacgccgagtacgaccggttgttccat
gagctcaaggccctggaggccgagcatccggagctgattacgcgggactcaccgacgcag
cgggtcggcagtgcggcgctgtcggcgttcacgcaggtgaagcacgagattccgatgctc
agcctgggcaacgcgtttgatgaaaccaccatgctggagttcgatcgccgggtgaccgaa
ggtctcgacctgcctgcaggcgatctgtttggcggtggcgcggcggtggagtacagctgc
gagcccaagctggacggcctggcggtcagcctgctgtaccaggatggcgagttggtacgg
ggcgctacccgtggcgacggcaccaccggtgaagacatcagcgtcaacgtgcgcaccgtg
cgcaatatcccattgaagctgcacggcagcggctggccggccacccttgaggtgcgcggc
gaagtgtttatgtccaaggccggtttcgagcggctcaacggctcgcaactggacgtcggc
ggcaagaccttcgccaacccgcgcaatgcggctgccggcagcctgcgccagttggactca
aagatcactgccagccgcccgctggaattttgctgttatggcgtgaccaccgatatcagc
gacagccacattggcaacctgcagcaactgaagcagtggggcatgcccatcagtcacgag
ctgaagctggccaagggcatccaggattgcctggagtactaccgtgatatcggcgagcgg
cggaacagcctgccgtatgagatcgacggtgtggtgttcaaggtcaacagcattgcctcc
cagcgcgaactgggtttccgcgcccgcgaaccgcgctgggccatcgcgcataaattcccg
gccctggaagagctgaccgaactgctcgacgtcgaattccaggttggccgcaccggtgcc
gtcacgccggtggcgcgcctgaagccggtcaaggtcgcgggtgtcaccgtgtccaacgcg
accttgcacaacatggacgaagtggcgcgcctgggcgtgatgatcggcgataccgtgatc
atccgccgtgccggtgacgtaatcccacaagtcgtgtcggtggtgcttgaacgacgcccg
gaaacggcgcggccagtgccgatccccgagcgctgcccggtgtgcggttcccatgtggaa
cgcacgcaactggtcaagcgcagcaaaggcaaggaaaccgtcagcgagggcgcggtgtac
cgttgcgtcggccgcctggcctgtggcgcgcagctcaagcaggcgatcatccattttgtt
tcgcgtcgtgccatggatatcgacggcctcggcgacaagaccatcgaacagttggtggat
gaaaaactcatcggctcgccggcggatctctacaaactgaagtacgagcagatcatcgac
ctggaaggcttcgccgatatttccagcaagaagctgattagcgccatcgaaaacagcaag
accccgaccctggcgcgctttatctatgccctgggcattcccgacgtaggcgaggagacc
gccaaggtgctggcgcgctccctggcctcgctggaacgtgtgcagaaggccttgccggaa
gtgctgacgtacttgccggacgtcggtctggaagtggcgcacgagatccacagcttcttt
gaagacagccataaccaggatgtgatcggtgcgctgctgtcgccggatgaatgcggtctg
caattgcaggagcagggcgacctgagtgccgaattcgccgccagcaccaccttgggcggc
ttgctcgacaagttgcacgtgccgagcgtcggcccgggcgctgcgcagaaactggcggac
aagttcggcaccctcgaaggcgtgatcaaggcggactggctggatatgcgccaggccctg
cccgagaaacaggccaaggccgtacgcgacttttttgacaaccaaggcaatgccaaccgc
gccctggccatcgagcagcagctcaaggacttcggcatgcactggctgagcgagaagaaa
gtcgtcgaaggtttgcccgaagccgggcacacctgggtgctcaccggctccctggagctg
atgagtcgcgacgtggcgaaggaaaaactcgaaagcctcggcgccaaggtggcgggttcc
gtctcggcgaaaacccattgcgtggtggcggggccgggggcgggttccaagctggccaaa
gccagcgagttgggcttgaaggtattggatgaagaagccttcgtcgccttcctcgccaag
cacaacatcacggtctga
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