Photorhabdus thracensis: VY86_09395
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Entry
VY86_09395 CDS
T03944
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptt
Photorhabdus thracensis
Pathway
ptt03030
DNA replication
ptt03410
Base excision repair
ptt03420
Nucleotide excision repair
ptt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VY86_09395
03410 Base excision repair
VY86_09395
03420 Nucleotide excision repair
VY86_09395
03430 Mismatch repair
VY86_09395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptt03032
]
VY86_09395
03400 DNA repair and recombination proteins [BR:
ptt03400
]
VY86_09395
Enzymes [BR:
ptt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VY86_09395
DNA replication proteins [BR:
ptt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VY86_09395
DNA repair and recombination proteins [BR:
ptt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VY86_09395
NER (nucleotide excision repair)
GGR (global genome repair) factors
VY86_09395
MMR (mismatch excision repair)
DNA ligase
VY86_09395
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VY86_09395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
RNA_ligase
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AKH63522
UniProt:
A0A0F7LP03
LinkDB
All DBs
Position
2192877..2194619
Genome browser
AA seq
580 aa
AA seq
DB search
MLNLLILILFIVFSSPIVAAEIFVSNTEKNCPEWSQDKLQRETNSLMQQMAHWDQLYRQK
GISEIDDEVYDQLMSELTHWQFCLKQAPHSDFPVEVFPDNKLVHPVAHTGLSKLKDKQEI
NRWLHGRLPVWLQPKIDGVAVTLVYQNGKLVSLISRGNGAEGVNWTAKSRHIPDIPQNIE
NAPPDLVLQGELFLHKEEHRQQLLGSDGARNRVAGLMMRKDHSSELKQIGLFIWSWPDGP
AEMESKLRKLADMGFPLALRYSHKIEEPEQVQKLRMHYFEQPMPFATDGIVLKQEIEPKG
NQWRSGSNSWAVAWKHPLRHQVTQVREVNFTIGRTGKISVVLGLDKVKLDDRQISRVNIG
SVRRWRQLDVLPGDQVTLTLAGHGIPKLAQVVWRIKERQDIQPPDKQHYHALSCLTLTVG
CEQQFNARLKWLGENLQMTGVSSGSWAMLTEQKLVTDLTGWLALSAQQIAALPGIGDKRA
QAVYSQFSKAKNQPFSYWMKGIGVPYMDKLSDNVYHWQQLEQKLAGTQLKQQLTTGQFKK
LSDFVNDTQIKAIAEKLSVARITGFDRENGVVVNPVGMVQ
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatttattgatattaattctgttcattgttttcagttcaccgatagttgcggct
gaaatttttgtttcgaatacagaaaagaattgccccgaatggtcgcaggacaaattacaa
cgtgaaactaacagcttgatgcaacagatggcgcactgggatcagctctatcgtcagaaa
gggatcagcgagatcgatgatgaggtttatgatcaattaatgtcggagctgactcattgg
caattctgtctgaaacaagcaccccattcagattttcctgtggaagtttttcctgataat
aagcttgttcatccggttgctcataccggattaagtaaactgaaagacaagcaggaaatt
aaccgatggttgcacggtagattacctgtctggttacagccaaagattgatggtgtagcg
gtaacattggtttatcagaacgggaaacttgtttcattaatcagccggggcaatggtgcc
gaaggggtaaattggacagcaaaaagccgacatattcccgatattccgcagaatatagaa
aatgctccacctgatttggtattgcaaggagaactctttctgcataaagaggagcataga
cagcaattattggggagtgatggcgctcgtaatcgggttgcgggtttgatgatgcgtaag
gaccattcgtcagaattaaaacaaataggtttgtttatctggagctggccggatggccct
gcggagatggaaagtaaattgcgcaaactggcagatatggggtttccattggcgcttcgc
tacagtcataaaatagaggaaccagagcaggtgcagaaactgcggatgcactattttgaa
caacccatgccttttgctacagacggtatcgtgctgaaacaggaaattgaacctaaagga
aaccagtggcggtctggatctaacagttgggctgtggcatggaaacaccctttacgccat
caggttacacaagtcagggaagttaattttactattggcagaacgggcaaaatctcagtg
gttcttgggctggataaggtgaaactggatgatcggcagataagcagagtcaatattggt
tctgttcgtcgttggcgacagttggatgtattaccgggggatcaggtgacgcttacattg
gcaggccatggtatcccgaaattagctcaggtggtatggcggatcaaagagcgtcaggat
attcagccaccggataagcagcattatcatgcactaagttgtttgacgttaacggtgggt
tgtgaacaacaatttaatgcacgattgaaatggcttggtgaaaatctgcaaatgacaggc
gtcagtagcggtagttgggcaatgttgaccgaacagaagttagtcactgatttaaccggt
tggttagcgctttcagctcaacaaattgcggccttaccaggaatcggagataaacgggca
caggctgtttattcgcaattcagcaaggcaaaaaatcagcctttttcctactggatgaaa
gggattggagtgccttatatggataagctgtctgacaatgtttatcactggcagcaactg
gagcagaaattagccggaacacagttaaaacagcaacttactaccgggcaatttaaaaag
ttgtctgattttgtcaatgacacgcagattaaagcaatcgcggaaaaactgtcagtggca
aggataacgggttttgaccgggaaaacggggtcgtagttaaccccgttggtatggttcag
tga
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