Pseudoalteromonas tunicata: PTUN_a1542
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Entry
PTUN_a1542 CDS
T05187
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptu
Pseudoalteromonas tunicata
Pathway
ptu03030
DNA replication
ptu03410
Base excision repair
ptu03420
Nucleotide excision repair
ptu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PTUN_a1542 (ligA)
03410 Base excision repair
PTUN_a1542 (ligA)
03420 Nucleotide excision repair
PTUN_a1542 (ligA)
03430 Mismatch repair
PTUN_a1542 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptu03032
]
PTUN_a1542 (ligA)
03400 DNA repair and recombination proteins [BR:
ptu03400
]
PTUN_a1542 (ligA)
Enzymes [BR:
ptu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PTUN_a1542 (ligA)
DNA replication proteins [BR:
ptu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PTUN_a1542 (ligA)
DNA repair and recombination proteins [BR:
ptu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PTUN_a1542 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PTUN_a1542 (ligA)
MMR (mismatch excision repair)
DNA ligase
PTUN_a1542 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PTUN_a1542 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ATC94157
LinkDB
All DBs
Position
I:1407020..1409041
Genome browser
AA seq
673 aa
AA seq
DB search
MTESVLSQIAALKVQLEEYNYQYYVLDNPSVPDSEYDRVMRELIALETQYPQFLSADSPS
QKVGGEALGSFSQVQHLVPMLSLDNAFDETEFRSFNKRLQDRLKDTTTLTFCCEPKLDGL
AVSILYQDGVLVQAATRGDGQTGENITENVKTIRNVPLKLRGESIPHRLEVRGEVFMDSA
GFAKMNELAIKNDGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYGMGIIEGGVVPDDH
FAQLQALGDWGLPMSPETKLVTGVDDALAYYQDIMNRRSQLKYEIDGVVIKVNDKALQQT
LGFVARAPRWAIAFKFPAQEEMTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLH
NQDEIERLGVKIGDTVIIRRAGDVIPQITQVVLAERKTDAKDIVFPSNCPVCQSKVERTV
GEAVARCSGGLVCGAQRKEAIKHFVSRKAFDIDGMGDKIVEQLVERELIHTPAEIFTLRQ
GHLESLERMGPKSAEKLVAAIGNAKQTTLARFLYSLGIREVGEATALNLANHYLTLDAIM
AASVDSLQEVADVGEIVAKHVNFFFREAHNRAVVDALIAAGITWAALEPKSEAEQPLAGL
TYVLTGTLLQMGRSDAKNRLQALGAKVSGSVSAKTDALVAGDKAGSKLTKAQELGIKVLF
EDDLIALLAQYNG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgacagagtcggttttaagccaaatagcagcactcaaagtacagttagaagaatataat
tatcaatattatgtacttgataatccgagtgtgccagacagtgaatacgaccgagtgatg
cgtgagctgattgcacttgaaacgcaatatcctcagtttttaagcgctgattcacccagc
caaaaagtgggcggtgaggcattaggcagttttagccaagtgcagcatttagtgccgatg
ttgtcattggataatgcgtttgatgaaaccgaatttcgtagttttaacaaacgattacaa
gaccgtttaaaagataccaccaccttgacattttgctgtgaacctaagcttgatggttta
gctgtgtctatcttgtatcaagatggcgtattggtgcaagcggcgactcgaggcgatggc
caaacgggtgaaaacattactgaaaatgttaaaaccattcgtaatgtgcctcttaaattg
cgcggagagtcaattccgcatcgtttagaagtgcgcggtgaagtctttatggatagcgcg
ggttttgccaaaatgaacgaattggcgattaaaaatgatggcaaagtctttgctaatccg
cgtaatgctgctgcgggcagtttgcgtcagctcgactcaaaaatcaccgccaaacgccct
ttaatgttttatgcctatggcatggggattatcgaaggtggcgtggtgccagatgatcat
tttgcacaattacaagcccttggcgattggggtttaccaatgagcccagaaactaaatta
gtcacaggcgttgatgacgcgctggcatattatcaagacataatgaatcgtcgcagccaa
ctcaaatatgaaattgatggtgtggtgatcaaagtgaatgataaagcactacaacaaacc
ttaggttttgtggcgcgtgcgccgcgctgggcaattgcgtttaaatttccggcgcaagag
gaaatgacccaattacttgatgtggaatttcaagtagggcgtaccggtgcaattacccct
gtcgctcgtttagagcctgtatttgtaggcggcgtgacagtatcaaacgcgacactgcat
aaccaagatgaaattgagcgtttaggcgtaaaaattggcgatactgtgattattcgccgt
gccggtgatgttattccgcaaattactcaagtggtgctcgcagagcgcaaaaccgatgct
aaagacatcgtttttccaagcaattgccctgtttgccaatcgaaagttgagcgtactgtc
ggtgaagccgtggctcgttgtagtgggggtttagtctgcggtgcccagcgcaaagaagcc
attaagcactttgtatcgcgtaaagcctttgatattgatggaatgggcgacaaaattgtt
gagcaactggttgagcgtgagctcattcatacccctgccgagatatttacccttagacaa
gggcatttagagtcacttgagcgcatggggccaaaatcggccgaaaagttagtggctgct
attggtaacgccaaacaaactactttagctcggtttttgtattctttaggcattcgtgaa
gtgggcgaggcaaccgcacttaatttagcgaaccattatttaacgttagacgccatcatg
gcggcctccgttgacagtttgcaagaagtggctgatgtgggcgaaattgtagctaaacat
gtgaatttcttttttcgtgaagcgcataatcgtgccgtggttgacgctttaattgccgcg
gggatcacttgggctgcacttgagcctaaatcagaagccgagcagccattagcagggctt
acttatgttttaaccggtactttgttacaaatgggccgaagcgacgctaaaaatcgctta
caggcgctaggagctaaagtatcaggtagtgtctcggctaaaacggatgcattagtggca
ggtgataaagctgggtcaaaattaaccaaagcacaagagttgggcattaaggtgttattt
gaagatgatttaattgctttattggcgcagtacaatggctag
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integrated database retrieval system
