Pseudomonas tohonis: TUM18999_38410
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Entry
TUM18999_38410 CDS
T07887
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptw
Pseudomonas tohonis
Pathway
ptw03030
DNA replication
ptw03410
Base excision repair
ptw03420
Nucleotide excision repair
ptw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TUM18999_38410 (ligA)
03410 Base excision repair
TUM18999_38410 (ligA)
03420 Nucleotide excision repair
TUM18999_38410 (ligA)
03430 Mismatch repair
TUM18999_38410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptw03032
]
TUM18999_38410 (ligA)
03400 DNA repair and recombination proteins [BR:
ptw03400
]
TUM18999_38410 (ligA)
Enzymes [BR:
ptw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TUM18999_38410 (ligA)
DNA replication proteins [BR:
ptw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TUM18999_38410 (ligA)
DNA repair and recombination proteins [BR:
ptw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TUM18999_38410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TUM18999_38410 (ligA)
MMR (mismatch excision repair)
DNA ligase
TUM18999_38410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TUM18999_38410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
Bep_C_terminal
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
BCG25650
UniProt:
A0A6J4E7S2
LinkDB
All DBs
Position
complement(4264209..4266581)
Genome browser
AA seq
790 aa
AA seq
DB search
MNDAQTAAQRIHQLRAELDEHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVTPES
PTQRVGGEALSAFGEVRHEVPMLSLGNAFEEEDLRAFDRSVQSGLGLSSGDLFGGGAEVE
YSCEPKLDGLAVSLLYRDGQLVRGATRGDGSTGEDISANVRTIRNVPLRLKGEGWPAVLE
VRGEVYMPKAGFEELNARQAESGGKTFANPRNAAAGSLRQLDPRITASRPLEFCCYGIGQ
VSGELSATQVGMLEQLKAWGVPISRELKLAKGVEACLAYYHDIGERRMALAYDIDGVVFK
VNNIEDQQQLGFRARTPHWALAHKFPAQEELTELLDVEFQVGRTGAVTPVARLKPVKVAG
VTVANATLHNMDEVARLGLKIGDTVIIRRAGDVIPQVMQVVLERRPENAREVHVPEQCPV
CGSAVERTQLVKRAKGKETTSEGSVYRCVGRLACGAQLKQAIIHFASRRALDIEGLGDKI
VEQLVDTGLVASPADLFTLTYDQVVALEGFADLSTRNLLAAIRDSARPTLARFIYALGIP
DVGEETAKLLARALGSLARIRQALPEVLTYLPDVGLEVAFEIRNFFSDAHNLKVIDDLLA
RGVVLQEEGDLSPEFAACASLPGFIDKLNIPFIAATGAEKLAARFGSLEGVIKADWLDLR
QVERLNEKAAKSLRDFFDQPANAERAALIEAQLREFGMHWQSEKKVVEGLPLAGQTWVLT
GTLEVMSRDVAKEKLEALGAKVAGSVSARTHCVVAGPGAGSKLAKATELGVRVLDEEAFL
AELKGMGVSL
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgcccagactgccgcccagcgcatccaccaattgcgtgccgaactggatgag
cacaactaccgctactacgtgctggacgaacccagcgtgcccgatgccgaatacgaccgc
ctgttccgcgagctgcaggccctggaggccgagcatcccgagctggtgacgccggagtcg
cccacccagcgcgtgggcggcgaagccctcagcgccttcggcgaggtgcgccacgaggtg
cccatgctcagcctgggcaacgccttcgaggaagaagacctgcgcgccttcgaccgcagc
gtgcagagcggcctggggctttcctccggcgacctgttcggcggtggcgctgaggtggaa
tacagctgcgagcccaagctcgacggcctggcggtcagcctgctgtatcgcgacggccag
ctggtgcgcggcgccacccggggcgatggcagcaccggtgaggacatcagcgccaacgtg
cgcaccatccgcaacgtaccgctcaggctcaagggcgagggctggcccgccgtgctcgaa
gtgcgcggcgaggtgtacatgcccaaggccggattcgaggagctcaacgcgcgccaggcg
gaaagcggcggcaagaccttcgccaacccgcgcaatgccgcggccggcagcctgcgccag
ctggacccgcgcatcaccgccagtcgcccgctggagttctgctgctacggcatcggccag
gtcagcggcgagctgtcggctacccaggtcggcatgctcgagcagctcaaggcctggggc
gtacccatcagccgcgagctgaagctggccaagggggttgaagcctgcctggcctactac
cacgacatcggcgaacgccgcatggccctggcctacgacatcgacggcgtggtgttcaag
gtcaacaacatcgaggaccagcagcagctgggcttccgcgcccgcaccccgcactgggcg
ctggcccacaaattccccgcccaggaggagctcaccgagctgctggacgtggagttccag
gtcggccgtaccggtgccgtcaccccggtggcacggttgaagccggtcaaggtggccggc
gtcaccgtggctaatgccaccctgcacaacatggacgaggtcgcgcgcctgggcctgaag
atcggcgacaccgtgatcatccgccgcgcgggtgacgtgattccccaggtgatgcaggtc
gtgcttgagcgccgccccgagaacgcccgcgaggtgcatgtgcccgagcagtgcccggtg
tgtggttccgccgtggagcgcacgcaactggtcaagcgtgccaagggcaaggaaaccacc
agcgagggctcggtctaccgctgcgttggccgcctggcctgtggcgcccagctgaagcag
gcgatcatccacttcgcttcccgccgtgcgctggatatcgaaggcctgggcgacaagatc
gtcgagcaactggtggataccgggctggtcgcatcgccggcggacctgttcaccctgacc
tacgaccaggtggtggcgctggaaggcttcgccgacctgtcgacccgcaacctgctggcg
gcgatccgggacagcgccaggccgaccctggcgcgcttcatctacgccctgggcattccc
gatgtgggcgaggagaccgccaagctgctggcccgcgccctcggctccctggcgcgcatc
cgccaggcgctgccggaggtgctcacctacctgcccgacgtgggcctggaggtcgccttc
gagatccgcaacttcttcagcgacgcccacaacctcaaggtcatcgacgacctgctggcc
cgtggtgtcgtgctgcaggaggaaggcgacctcagccccgagttcgccgcctgcgcttcc
ctcccgggtttcatcgacaagctcaacatccccttcatcgccgccaccggcgcagagaaa
ctggcggccaggttcggcagcctggaaggcgtgatcaaggccgactggctggacctgcgc
caggtggagcgcctcaatgagaaggcggccaaatccctgcgcgacttcttcgaccagcct
gccaatgccgagcgcgccgcgctgatcgaggcgcagctgcgtgaattcggcatgcactgg
cagagtgagaagaaggtcgtggaaggcctgccgctggccgggcagacctgggtgctgacc
ggcaccctggaggtgatgagccgcgatgtggccaaggagaagctggaggccctgggtgcc
aaggtggccggctcggtctcggcccgtacccattgcgtggtggccggccccggcgccggt
tcgaagctggccaaggccaccgagctgggcgtgcgcgtgctggacgaggaggcattcctg
gccgagctgaaggggatgggcgtctcgctctga
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integrated database retrieval system
