Pandoraea thiooxydans: ABW99_08380
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Entry
ABW99_08380 CDS
T03947
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptx
Pandoraea thiooxydans
Pathway
ptx03030
DNA replication
ptx03410
Base excision repair
ptx03420
Nucleotide excision repair
ptx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABW99_08380 (ligA)
03410 Base excision repair
ABW99_08380 (ligA)
03420 Nucleotide excision repair
ABW99_08380 (ligA)
03430 Mismatch repair
ABW99_08380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptx03032
]
ABW99_08380 (ligA)
03400 DNA repair and recombination proteins [BR:
ptx03400
]
ABW99_08380 (ligA)
Enzymes [BR:
ptx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABW99_08380 (ligA)
DNA replication proteins [BR:
ptx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABW99_08380 (ligA)
DNA repair and recombination proteins [BR:
ptx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABW99_08380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABW99_08380 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABW99_08380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABW99_08380 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AKJ70469
UniProt:
A0A0G3EWU1
LinkDB
All DBs
Position
complement(2619383..2621473)
Genome browser
AA seq
696 aa
AA seq
DB search
MSDSLTKSGTAVARAGITSPAEQAARLRAELEQHNYAYYVLDAPTVPDAEYDRLYAALVQ
IETEHPELVTPDSPTQRVGGQPATGFATVTHKVPMLSLNNGFADEDVVAFDRRVSEALYE
RDGDANDLFGQAVEYACELKFDGLAVALRYEDGLLVKAATRGDGTTGEDVTANIKTVRSI
PLRLRTRTPPAVLEARGEVLMFRRDFEKMNERQREAGEKEFANPRNAAAGSLRQLDSRVT
ARRPLSFFSYGIGELLGADMPPTHDALLRWYLELGLPVCDRRAVVHGAGGLLAFYREVGQ
ARASLPYDIDGVVYKVNRLDEQQRLGFVSRAPRFALAHKFPAQEALTTLLDIEVQVGRTG
AITPVARLAPVFVGGVTVTNATLHNEDEVRRKDLLIGDTVIVRRAGDVIPEVVGAVLERR
PADARAFVMPSACPVCGSAIERLPDEAIARCTGGLICAAQRKQALWHFAQRRALDIDGLG
EKLIDQLVDQHLIRTPADLFKLGLAKLAALDRMADKSASNLLAALEQAKHTTLARFIYAL
GIRHVGEATAKDLARHFGMLDRLMAASEAELLEVNDVGPVVAQSIANFFAEPHNVEVIEQ
LRAAGVSWAESEPQRAAAVSPLAGKTFVLTGTLPTLSREQAKERLEAAGAKVAGSVSKKT
DYVVAGAEAGSKLAKAEELGVPVLDEDGMLALLDAN
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgtccgactctcttactaaatccggcacggcagtcgcacgtgccggcatcacttctccg
gccgaacaggctgcgcggctgcgcgccgagctggaacagcataactacgcctattacgtg
ctcgacgctccgacggtgcccgatgccgagtacgaccgcctttacgcggccctggtgcag
atcgaaaccgagcatcccgagctggtcactcccgattctccgacgcagcgcgttggagga
cagcccgccacgggttttgcgaccgtcacgcataaagtcccgatgctgtcgctcaacaac
gggtttgccgacgaggatgtcgtcgcattcgaccggcgagtcagcgaggcgctgtatgag
cgcgacggcgatgcaaatgacctctttggacaagccgtcgaatatgcctgcgagttgaaa
ttcgacggcctggcagtcgcgctgcgctatgaggacggactgctggtgaaggccgccacg
cgaggcgacggcacgaccggcgaggatgtgacggccaacatcaagaccgtgcgctcgatc
ccgctgcgcctgaggacgcggaccccgccggcggtgttggaagcgcgtggcgaagtgttg
atgttccgccgtgacttcgaaaagatgaacgagcgccagcgcgaggcgggcgaaaaggag
tttgccaatccgcgcaatgccgcggctggcagcttgcgtcagctcgattcgcgtgtgacg
gcacgacgtcccctgtcgtttttttcttacggtattggcgaattgctgggcgcggatatg
ccgccgacccacgacgcgttgttgcgctggtatctcgagctcggcctgccggtatgcgac
aggcgtgccgtggtgcacggcgcgggtggcctgctcgcgttctatcgggaggtcggccag
gcccgggcgtctttgccgtatgacatcgacggcgtcgtttataaggtcaaccggctcgat
gagcagcagcgcctgggcttcgtgtcgcgcgcgccgcgctttgcgctggcgcataaattc
cccgcgcaggaagcgctgacgaccttgctcgatatcgaggttcaggtcggccggaccggc
gccatcacgccggtggcgcgcctggcgccggtgttcgtcgggggcgtgacggtaaccaac
gcgacgctgcacaacgaggacgaagtccgccgcaaggatctcctgattggcgacaccgtc
atcgtgcggcgcgctggcgacgtgatcccggaggtggtgggcgcggtgctggagcggcgc
ccggccgatgcgcgcgcgtttgtcatgccgagcgcctgcccggtgtgcggatcggccatc
gagcggctgccggacgaggcgatcgcgcgctgcaccggtggactgatttgtgccgcgcag
cgcaagcaggcgctatggcactttgcccagcgccgggcgctggacatcgacggactgggc
gagaaattgatcgaccaattggtcgatcagcacctgattcgcacgccggccgatctcttc
aagctgggcttggcgaagctggcggccctggatcggatggccgataaatcggccagcaat
ttgctggcggcgctcgagcaggccaagcatacgacgctggcgcgcttcatctatgcgctg
ggcattcgccatgtgggcgaggcaaccgccaaagacctggcccgtcacttcggcatgctg
gatcggctgatggcggcaagcgaagccgagttgctggaggtcaatgatgtcggcccggtg
gtagcgcagtccatcgccaattttttcgccgagccgcataatgtcgaggtgatcgaacaa
ctgcgcgcggccggcgtcagttgggcggagagcgaaccacagcgcgccgcggcggtcagt
ccattggccggcaagacatttgtcctgacggggacgttaccgacgctgtcccgcgagcaa
gccaaggagcggctcgaggccgccggcgccaaggtcgccgggtcggtgtcgaaaaagacc
gactacgtcgtggcgggtgccgaagccggcagcaagctggccaaggccgaggaattgggc
gtgccggtgctcgacgaagacggcatgcttgcgttgctggatgcgaactga
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