Ectopseudomonas toyotomiensis: JWV26_12885 Help Entry JWV26_12885       CDS       T07285                                  Symbol ligB Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism pty  Ectopseudomonas toyotomiensis Pathway pty03030   DNA replication pty03410   Base excision repair pty03420   Nucleotide excision repair pty03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pty00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     JWV26_12885 (ligB)    03410 Base excision repair     JWV26_12885 (ligB)    03420 Nucleotide excision repair     JWV26_12885 (ligB)    03430 Mismatch repair     JWV26_12885 (ligB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pty03032]     JWV26_12885 (ligB)    03400 DNA repair and recombination proteins [BR:pty03400]     JWV26_12885 (ligB) Enzymes [BR:pty01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      JWV26_12885 (ligB) DNA replication proteins [BR:pty03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      JWV26_12885 (ligB) DNA repair and recombination proteins [BR:pty03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      JWV26_12885 (ligB)    NER (nucleotide excision repair)     GGR (global genome repair) factors      JWV26_12885 (ligB)    MMR (mismatch excision repair)     DNA ligase      JWV26_12885 (ligB)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       JWV26_12885 (ligB) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_OB DNA_ligase_aden HHH HHH_5 RecR_HhH HHH_2 RNA_ligase Motif Other DBs NCBI-ProteinID:  QSL90675 UniProt:  A0ABD7DQ78 LinkDB All DBs Position complement(2796283..2797974) Genome browser AA seq 563 aa AA seqDB search MKIALLLLLLPLAAQATPCPDWPTSRADSELAALSQQIAEWDDAYHNHGRSLVADEIYDQ ARDRLQSWHRCFPTARMALADPLAGSSGTITHPVPQTGLRKLSDAAVAKWINSRDDLWIQ PKVDGVAVTLVYRDGVLQQAISRGDGRLGQDWTARVLQLPAIPARLQEPLDAVLQGELYW RLDGHVQGRDGGVGARGKVAGLMARQKLDQQQVDSIGLFVWDWPDGPANMPERLQALQRL GFDDSLHYTQPLRDAKEARRWRQRWFDQPQPFASDGVVLRQGTRPPGERWQAEAPHWAVA WKYPAGQALAVVQAVDFSIGRTGRITPILRLQPVDLDERRISRVALGSLQTWEKLDIRPG DQVAIRLAGLTIPRLEQVIWRSQERSAVHAPDPSRYHAMSCWRLSGECQQQFQARLNWLA GKQGLNLPGVGPGTWSTLLAGQKLDGLLDWLALDSEHLQQLPGIGPRRASQLQQAFAQAQ QRSLQQWLQALGAPAGFQLGAEDDWTTLVTRSHAEWMQQPGVSQNSAERLLAFFSHPEVQ RLGAQLQEAGTVAFLPQENSPRG NT seq 1692 nt NT seq  +upstreamnt  +downstreamnt atgaaaattgccctgctgctattactccttccgctggctgcccaggccaccccctgcccc gactggcccaccagtcgcgccgactccgagctcgccgcgctcagtcagcagatagccgag tgggacgacgcctaccataaccacggccgctcgctggtggctgatgaaatctatgaccag gcccgcgatcgcctgcagtcctggcatcggtgctttccgaccgcccgcatggcattggcc gaccctctggctggcagcagcgggacgatcacgcacccagtgccacagaccggcctgcgc aagctgagcgacgcggcagtggcgaagtggatcaacagtcgcgacgatctgtggattcag cccaaggtcgacggcgtcgcggtcaccctggtctaccgagacggcgtgctgcaacaagcc atcagccgtggcgatggacgacttggccaggactggacagcccgcgtgctgcagctgccg gccattcccgcacgcctgcaggaaccactcgatgccgtgttacagggcgagctctactgg cgcctggacggccacgtgcaaggccgcgacggtggggttggcgcccgtggcaaggtggca ggcctgatggcgcgacaaaagctcgaccagcaacaggtcgactccatcggcctgttcgtc tgggattggccggatggcccggcgaacatgccagagcgcctgcaagccctgcagagactg ggttttgacgacagcctgcactatacccagcccctgcgggacgcaaaggaagcccgccgt tggcgccaacgctggttcgatcagccgcagccgtttgccagcgatggtgtggtcctgcgt cagggcacgcggccacccggagagcgttggcaggcagaagcgccgcactgggcggttgcc tggaaatacccggccggccaggcgctggccgtggtgcaggcggtggatttcagtatcggc cgtactggacgcatcacgccgatcctgcgcttgcagccggtcgacctcgacgagcggcgc atcagccgggtcgctctcggctcgctgcaaacctgggagaagctggacatacgccccggc gatcaggtggcgatacgcctagccggcctgaccattccgcgtctcgagcaagtgatctgg cgcagccaggagcgctcagcggtacacgcgcctgatcccagtcgataccacgccatgagt tgctggcggctcagtggcgagtgtcagcaacagttccaggcacgcctgaactggctcgcc ggcaaacaggggctgaacctgcccggcgtgggaccaggcacctggagcacgctactggcg gggcagaaactggatggcctgctcgattggctggcactcgatagcgaacacctgcaacag ctgcccggtatcggcccaaggcgcgcctcgcagctgcagcaggccttcgcccaagcccaa cagcgctcactgcagcaatggctgcaggctctcggtgcaccagctggttttcagctcggc gcggaggatgactggaccacgctagtgactcgcagccacgccgagtggatgcagcaaccc ggcgtgagccagaacagcgccgagcgcctgctggcattcttcagccacccggaagttcag cgcctgggcgcgcaactgcaggaagccggcaccgtcgctttcctgccgcaggagaattca ccgcgcggttga

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