Paenarthrobacter ureafaciens: FV140_07070
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Entry
FV140_07070 CDS
T06726
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pue
Paenarthrobacter ureafaciens
Pathway
pue03030
DNA replication
pue03410
Base excision repair
pue03420
Nucleotide excision repair
pue03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FV140_07070 (ligA)
03410 Base excision repair
FV140_07070 (ligA)
03420 Nucleotide excision repair
FV140_07070 (ligA)
03430 Mismatch repair
FV140_07070 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pue03032
]
FV140_07070 (ligA)
03400 DNA repair and recombination proteins [BR:
pue03400
]
FV140_07070 (ligA)
Enzymes [BR:
pue01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FV140_07070 (ligA)
DNA replication proteins [BR:
pue03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FV140_07070 (ligA)
DNA repair and recombination proteins [BR:
pue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FV140_07070 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FV140_07070 (ligA)
MMR (mismatch excision repair)
DNA ligase
FV140_07070 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FV140_07070 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QMU84546
LinkDB
All DBs
Position
1517209..1519470
Genome browser
AA seq
753 aa
AA seq
DB search
MATAAVAVEEGAPPSENLREEYQELVDLVRKYRYAYYQEDAPTVSDAEYDLLYRRLEELE
ALHPELVANDSPTQEVGGEVSAAFAAVEHLQRMYSLDDVFSLDELEAWVRKVEASVAKLG
DRVPPISWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVLTIKEIPRQLSGS
GYPSEVEIRGEVFIPSKAFAEFNDSLVAAGKAPLANPRNAAAGSLRQKDPAETAKRPLSM
FVHGIGAREGLDAASQSETYKLLGEWGLPVSPYSKVLDSYDGVLEFIAHYGEHRHGLLHE
IDGIVVKIDDFATQRALGYTSRVPRWAAAYKYPPEEVHTKLLDIMVNVGRTGRVTPFGLM
EPVKVSGSTVGMATLHNQDVVKAKGVMIGDIVILRKAGDVIPEIVGPVLALRDKQDPPVR
EFVMPTECPSCGTPLAPSKEGDVDIRCPNGKSCPSQLRERVFHVASRGAFDIEALGWEAA
IALTQPAEPEIPPLTSEAALFDLTREDLANVMIRREKKSKGVGTGQYELVPYFYTKATAK
TPSKPTATTEKLFTELEKAKKQPLWRVLVALSIRHVGPTASRALATNFGSMDAIRNATEE
QLAHVDGVGPTIAAALKEWFAVDWHNEIVDRWAAAGVRMEDDRDTATPRTLEGLTVVVTG
TLPNFSRDEAKEAIIIRGGKAAGSVSKNTSYLVAGESAGTKLDKAEQLGIPVLDEDGFRE
LLANGPAAPEGQPATSEGQENVDEAAAREGESE
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggccacagccgccgtcgccgtagaggagggtgcgccgccgtcggaaaacctccgggaa
gagtaccaggaactggttgacctggtccggaagtaccggtacgcgtattaccaagaagac
gctcccactgtttccgacgctgaatatgacctcctgtaccggcgcctggaggaattggaa
gccctccatccggagctcgtcgcgaatgattcacccacccaggaagtgggcggtgaggtc
tccgcggcttttgccgccgtcgagcacctccaacggatgtacagcctcgatgacgtgttc
tcgctcgacgagctggaggcctgggtgcggaaggtcgaggcgtcggtggccaagctcggg
gacagggtcccgccgatctcgtggttgaccgagttgaagatcgatggcctggccgtgaac
ctgctgtaccgggacggcaagctggtgcgcgctgctacccgcggcgatggcaccacgggt
gaggacatcacccataacgtcctgaccatcaaggagatcccgcggcagctcagcggctcg
ggctatccgtccgaagttgagatccgcggcgaggtcttcattccgtccaaggctttcgcg
gaattcaacgactcgttggtggcagcgggcaaggcgccgctggccaacccccgcaacgcc
gccgcgggttcgctccggcaaaaagatccggcggagaccgccaagcgtcccctcagcatg
ttcgtccacggcatcggggcgcgtgaagggctggatgcggccagccagtcggagacctac
aagctcctgggcgaatggggactcccggtcagtccctactcgaaggtcctggactcttac
gacggcgtcctggaattcattgcccactacggcgaacaccgccacggcctcctgcacgag
atcgacggcatcgtggtgaagatcgatgacttcgccacccaacgcgcactcggctacacc
tcccgcgtgccgaggtgggccgccgcgtacaagtacccgccggaagaggtccacaccaaa
ctgctggacatcatggtcaacgtcggccggaccggacgtgtcactccgttcgggttgatg
gagcccgtcaaggtgtccggctccaccgtgggcatggctacgctgcacaaccaggacgtc
gtcaaagccaaaggcgtgatgatcggcgacatcgtgattcttcgcaaagccggtgacgtc
atccccgaaattgtcggtccggtactggcgctccgcgataagcaggatccgcccgtccgc
gaattcgtcatgcccaccgaatgcccttcctgcggcactccgctcgcgccttccaaggag
ggcgacgtggacatccgctgccccaatggaaagtcctgcccttcccagttgcgtgagcgg
gtcttccacgtggccagccgtggcgccttcgatatcgaggccctcggctgggaagcggct
atcgctttgacccagcccgcagaaccggagattcccccgctgaccagcgaggccgcgctg
tttgacttgacgcgcgaagatctggcaaacgtgatgatccgccgcgagaagaaatccaag
ggcgtcggcacaggccagtacgaactcgttccctacttctatacgaaagccacggccaag
acgccgtcaaagcccactgccaccacggagaagcttttcacggagctggagaaagccaag
aagcagcccctgtggcgggtgcttgtagcgttgtccatccgccacgtcggtcccaccgcc
tcgcgggcactggcaaccaacttcggaagcatggatgccattcggaatgcgaccgaggaa
caactggcccatgtggacggcgtcggaccgaccattgcggctgcccttaaggaatggttc
gcggttgactggcacaacgagatcgtggacaggtgggctgccgccggcgttcggatggag
gatgaccgggatacggctactccgcgcacgcttgaaggactgaccgtggtggtcacggga
accctgccgaacttcagccgggatgaggccaaggaagccatcatcatccgtggtggcaag
gcggcaggctcggtatcgaagaacaccagctatctggtggccggggaaagcgctggtacc
aagctggacaaagcggaacagctcgggatcccggtgttggatgaggacggattccgtgag
ctcctggccaatgggccagctgcgccggaaggtcagcccgccacgtctgaaggccaggag
aacgtcgatgaagctgccgcgcgggaaggggaatccgaatga
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