Polaribacter undariae: NQP51_00085
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Entry
NQP51_00085 CDS
T08505
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pun
Polaribacter undariae
Pathway
pun03030
DNA replication
pun03410
Base excision repair
pun03420
Nucleotide excision repair
pun03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQP51_00085 (ligA)
03410 Base excision repair
NQP51_00085 (ligA)
03420 Nucleotide excision repair
NQP51_00085 (ligA)
03430 Mismatch repair
NQP51_00085 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pun03032
]
NQP51_00085 (ligA)
03400 DNA repair and recombination proteins [BR:
pun03400
]
NQP51_00085 (ligA)
Enzymes [BR:
pun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NQP51_00085 (ligA)
DNA replication proteins [BR:
pun03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NQP51_00085 (ligA)
DNA repair and recombination proteins [BR:
pun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NQP51_00085 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NQP51_00085 (ligA)
MMR (mismatch excision repair)
DNA ligase
NQP51_00085 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NQP51_00085 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
AphA_like
5_3_exonuc
HHH
Auto_anti-p27
OAS1_C
Motif
Other DBs
NCBI-ProteinID:
UWD32081
LinkDB
All DBs
Position
15990..17987
Genome browser
AA seq
665 aa
AA seq
DB search
MTNQQKIVALRDELNTHNYNYYGLDNASISDYEFDIKLKELEKLEAENPEFFDPNSPTQR
VGGTVTKNFNTVVHKNRMYSLSNSYSKEDLLDWEERVQKVLGTTEVEYTCELKFDGASIN
LTYENGQFVKAVTRGDGFQGDEVTPNIKTIRSIPLSIKEDFVSNFEMRGEIILPIEGFNK
MNEERVENGEEEYRNPRNTASGSLKLQDSTEVARRPLDCLLYQVVTEERKYKTHFESLEN
ARKVGFKVPETITLVKSIDEVFDFITNWDTKRHSLPYETDGIVVKVNNLYQQEELGYTAK
APRWAIAYKFKAEQVSTVLKEITYQVGRTGAITPVANLEPVQLAGTTVKRASLHNADQIS
KLDIRVGDTVFVEKGGEIIPKIIAVDFSKRPQDSEHTIYATNCPVCNTELIRTEGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEGLVKSYADLYDLTVDQVIPL
ERMAEKSAQNMIDGIIKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMSADLET
LISVDEIGERIAQSIIEFSTNQENIDLINRLKTSGVQLEVSAESLENQTDKLAGQIFVVS
GVFYQMSRNELKKTIEDNGGKVSSSISKKTNFIVAGDNMGPSKLTKAESLGIAIISEQDF
IDKIS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatcaacaaaaaatagtagcacttcgtgatgaattaaatacacataattacaat
tattatgggttagataacgcatcaatttcagattacgagttcgatataaaattaaaagaa
ttagaaaagttagaagcagaaaaccctgagttctttgatccaaattctccaacgcaaaga
gtaggaggtacggtaacaaaaaactttaatacggttgttcataaaaatagaatgtattct
ttaagcaactcctattctaaagaagatttattagattgggaagaaagagtgcaaaaagtt
ttgggcacaacagaagtagagtatacctgtgaactaaaattcgacggagcttctatcaat
ttaacctatgaaaatggtcagtttgttaaagcggtaacacgtggcgacggttttcaggga
gatgaagtaacacctaatataaaaacaattcgttctattcctttaagtataaaagaagac
ttcgtctctaatttcgaaatgcgaggagaaatcattttacctattgaaggttttaataaa
atgaatgaagagcgtgtagaaaacggagaagaagaatatagaaatccaagaaacaccgca
agcggaagtttaaaattacaagacagtacagaagttgcaagaagacctttagattgttta
ttatatcaagtggtaacggaagaacgtaaatataaaacccattttgagagtttagaaaac
gctagaaaagtaggttttaaagttccagaaaccatcactttggtaaaatcgattgatgaa
gttttcgattttatcaccaattgggatacaaaacgacacagtttaccttacgaaactgac
ggaattgtagttaaagtaaataatttatatcagcaagaagaactagggtacacagcaaag
gcaccaagatgggcaattgcgtataagtttaaagccgaacaagtttcaacagttttaaaa
gagattacgtatcaggttggaagaacgggagcaataactccggtcgcaaatttagaacct
gtgcaattagcaggtacaacagtaaaaagagcctcattgcacaatgcagatcaaatttca
aaattagatattagagtaggagatactgtttttgtggaaaaaggaggagaaattattcct
aagattattgctgtagatttttcaaaacgacctcaagactcagaacatacaatttacgca
accaattgtccggtgtgtaatacagaattgataagaacagaaggagatgcaaagcattat
tgtccaaacgagtttggatgtgcgcctcaaattacaggaagaattcagcattttatttct
agaaaagccatggatatcgatggtttagggggtgaaacggtagatttattacgaaaagaa
ggacttgttaaaagttatgctgatttatatgatttaaccgtagatcaggttattccgtta
gaaagaatggcagagaaatctgctcagaatatgattgacggaattatcaaatcaaaagaa
attccgttcgaaaaagtattatttgcactcggaattcgttttgtaggagaaacggtagct
aaaaaattagcaaaacattttaaatcaatagacaatttaatgtctgcagatttagaaacg
ttaataagcgtagacgaaataggcgagagaatagcgcaaagtattattgaattttctaca
aatcaagaaaatatcgatttaataaatcgtttaaaaacatcgggagttcaattagaagtt
tctgctgaaagtttagagaatcaaacagataaactagcaggacaaatatttgtagtatct
ggcgttttttatcaaatgagtagaaatgaattaaagaaaactattgaagataatggcgga
aaagtaagttcatcaatctctaaaaaaacaaattttattgttgctggtgataatatggga
ccatcaaaattaacaaaagcagagagtttaggaattgcaataatttctgaacaagatttt
atagataaaattagttaa
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