Rubellicoccus peritrichatus: RZN69_02155
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Entry
RZN69_02155 CDS
T09488
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
puo
Rubellicoccus peritrichatus
Pathway
puo03030
DNA replication
puo03410
Base excision repair
puo03420
Nucleotide excision repair
puo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
puo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RZN69_02155 (ligA)
03410 Base excision repair
RZN69_02155 (ligA)
03420 Nucleotide excision repair
RZN69_02155 (ligA)
03430 Mismatch repair
RZN69_02155 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
puo03032
]
RZN69_02155 (ligA)
03400 DNA repair and recombination proteins [BR:
puo03400
]
RZN69_02155 (ligA)
Enzymes [BR:
puo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RZN69_02155 (ligA)
DNA replication proteins [BR:
puo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RZN69_02155 (ligA)
DNA repair and recombination proteins [BR:
puo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RZN69_02155 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RZN69_02155 (ligA)
MMR (mismatch excision repair)
DNA ligase
RZN69_02155 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RZN69_02155 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
FeoA
UPF0758_N
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WOO41874
UniProt:
A0AAQ3LC95
LinkDB
All DBs
Position
541895..543889
Genome browser
AA seq
664 aa
AA seq
DB search
MTDREKIESLRAEIARHDELYYRNSDQEISDQEYDKLKRELVHLEEANPDLALAPENTPT
ARVGDDRVEGFAKYKHLQGMLSLDNTYSDDELRDFDTRLKKIFPDELSLPYLVEPKIDGV
AVSLTYENGRFVRAVTRGNGTEGDEITNNLRGLPDIPEKLAGSKHPKLIEIRGEIYMTDE
EFARINQEREDQGLELFKNPRNLTSGTVKQLGGISGRNLHIVLYGIGHCEPLTFKTQSDI
HQAIHDWGLRTQEKIWRVEGIEAAWSAIEELDQLRHSFDYATDGAVVKLDNLEWQKEAGF
TSKAPRWAIAYKFAAEQAETILKAISVQIGRTGAVTPVAELEPVELAGTTVSRATLHNED
EISRKDIRPGDTVVVQKAGEIIPQVLRSIPDKRPADSQPFDFAAFLQEQGIEAERVEGQA
AWRITSKDNPVQMRRRITHFSSKACMDIENLGEAVVDQLVSRELIKDQADLYQLSFEDVL
PLEKFADKSARNLIDALERSKQQPLWRLIHGLGITHVGAQASKDIAGHYGSLEKLASVSV
EELTAIDGIGGIMAESINAWFADETNRTLVQRLTDYGLNVAEEITQTKDGPLQGKTVVLT
GTLPSLSRGEATAMIEAAGGRASSSVSKKTDYVLAGESAGSKLEKAQKLGITVLSEEAFR
ELVE
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccgcgaaaaaatcgaatctctccgggctgagattgcccgtcacgacgagctc
tactaccgtaattccgatcaggagatcagtgaccaggaatatgataaactcaaacgcgaa
ctggtccaccttgaagaggcaaatcctgatctcgccctcgcaccggaaaacacaccaacc
gcacgcgtcggcgatgaccgggtcgaaggctttgccaaatacaaacacctgcagggcatg
ctctcactcgacaacacctacagtgatgacgagttacgtgactttgatacccgtctgaaa
aagatatttcctgatgagctgagcctgccctatctcgttgaaccaaaaattgatggcgtt
gctgtcagcctgacttatgagaacggaagattcgtccgtgctgtgacgcgtggcaatgga
accgagggcgacgaaataaccaataacctgcgaggccttcctgacatcccggaaaaactc
gcaggcagcaagcatccaaagctaatcgaaatccgcggcgaaatctacatgacggacgag
gagttcgcccgtatcaatcaggagcgcgaagaccaggggctggaacttttcaaaaacccg
cgcaacctcacctccggcaccgtcaaacaactcggcggaattagcggacgcaacttgcat
attgttctttacggaatcggccattgcgaaccgcttaccttcaaaacgcaatcggacatc
catcaggcaatccacgactggggtctgagaacccaggaaaaaatctggcgagttgaagga
atcgaagctgcctggagtgcgatcgaagagctcgatcagctccgtcatagttttgattac
gcaacagacggagctgtggttaagctcgataatctcgaatggcaaaaagaagccggtttc
accagcaaggcacctcgctgggccattgcatacaagttcgccgccgaacaggccgaaacc
attctcaaagccatcagcgttcaaatcggtcgaaccggagccgtcacgcccgtggccgaa
cttgagccagtggaactcgcaggaaccacagtgtcccgcgccacccttcacaatgaagac
gaaatcagtcgaaaggacattcgtccgggtgacacggtagtcgtacaaaaagccggagaa
atcattccgcaggtgttgcgctccatcccggataaacgtcccgccgacagccaacctttt
gacttcgctgccttcctgcaggaacaaggcatcgaagctgagcgtgtcgaaggtcaagct
gcctggcgcatcacgagcaaggacaatccagtgcaaatgcgtcgacgcatcacgcacttt
tcatccaaagcctgcatggacatcgagaatctcggcgaagctgtcgtcgatcaacttgta
tcacgcgaactcataaaagaccaggccgacctttaccaactttcctttgaagatgtcctg
ccgctggaaaagtttgccgacaagtcagcccggaatcttatcgacgcgcttgagcgttca
aaacagcagccgctttggcgattgatccacggacttggaatcacacatgtcggcgcccag
gcatcaaaggacattgcaggacattacggtagcctggaaaaactcgcctcagtcagcgtc
gaagaactgactgccatcgacggcatcggaggcatcatggcagaaagtatcaatgcttgg
tttgccgacgaaaccaacaggacactcgttcaacgcctgaccgactacggactcaacgtc
gccgaagaaatcactcaaaccaaggacggtccactacagggaaaaactgtcgtcctcact
ggcactctgccctctttaagtcgcggcgaagccactgccatgatcgaagcggcaggcggc
agagccagttcatccgtcagcaagaagaccgactacgtcctggccggagagtccgccggc
agcaaactcgaaaaagcccagaagctgggcatcactgtactgagcgaagaggcgttcagg
gagttggtggagtga
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