Pusillimonas sp. T7-7: PT7_1737
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Entry
PT7_1737 CDS
T01486
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
put
Pusillimonas sp. T7-7
Pathway
put03030
DNA replication
put03410
Base excision repair
put03420
Nucleotide excision repair
put03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
put00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PT7_1737
03410 Base excision repair
PT7_1737
03420 Nucleotide excision repair
PT7_1737
03430 Mismatch repair
PT7_1737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
put03032
]
PT7_1737
03400 DNA repair and recombination proteins [BR:
put03400
]
PT7_1737
Enzymes [BR:
put01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PT7_1737
DNA replication proteins [BR:
put03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PT7_1737
DNA repair and recombination proteins [BR:
put03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PT7_1737
NER (nucleotide excision repair)
GGR (global genome repair) factors
PT7_1737
MMR (mismatch excision repair)
DNA ligase
PT7_1737
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PT7_1737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
BRCT_2
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AEC20277
UniProt:
F4GMI3
LinkDB
All DBs
Position
complement(1851671..1853767)
Genome browser
AA seq
698 aa
AA seq
DB search
MTRKPADSILAAQRAETLRAEINEHNHRYYVQDAPVVSDAAYDKLMTELIELEQTHPELI
TPESPTQRVGAEPLPSFDSVRHAVPMRSLGNAFDAEDIHAFSKRVFDTLHGAGMAGAEEK
VQYVAELKFDGLAVSLRYEEGRLVRAATRGDGQTGEDITSNIRTLRSVPLKLKGDYPQVL
EVRGEVLMNRQDFEKLNQAQQARGEKVFVNPRNAAAGSLRQLDPRITAKRPLRFYAYGWG
EIRIVHDGQTELFRQESGSAEMPRKTHAQMLDWLQALGLPVNDSRKLVCGAQGLLDFYEH
IGSTRTALPFDIDGVVYKVDSLEAQEVLGYVARAPRFAIAHKFPAQEETTRLLSIEVQVG
RTGAITPVARLEPVFVGGVTVTNATLHNEDEIRRKDVRVGDTVVVRRAGDVIPEVLAPVL
DLRPPDTSLFVMPRQCPVCGSAIERPEDEAVSRCTGGLFCAAQRKQSLSHAAGRKALDIE
GLGEKLVDQLVDSGRVKSLADLFTLTSDELAAYERMGRKSADNLVAALEKARTPSLERLL
YALGIRHVGEATARDLARHFGSVDAVMAADETALLQVHDVGQVVAASILNFFAEPHNRDV
IAQLAAAGVHASAPEQASGSDLRLAGKTLVLTGTMPNWTRDEATRRILAAGGKVSGSVSK
KTAYVVAGEEAGSKLTKAAELGVPVLDEDGLKALLGIA
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtgacacggaaacctgctgattcaattttggcggcacagcgggccgagactttgcgtgcc
gaaatcaacgagcataatcatcgctactacgtgcaggacgcgcccgtggtgtccgatgcc
gcctacgataaactgatgaccgagctgatcgagctcgaacaaacgcacccagaactgatc
acgcccgaatcccccacccagcgtgtaggggcggagcctctaccgtcattcgacagtgtc
cggcacgccgtacccatgcgctcattgggcaatgctttcgatgccgaagacattcatgct
ttcagtaagcgggtgtttgacacgctgcacggcgccggtatggctggcgcagaggagaag
gtgcagtatgtggctgaactgaagttcgatggactggcagtcagcctgagatatgaagaa
ggccgtcttgtgcgtgcggccacgcgtggtgatggtcaaacgggtgaagacatcaccagc
aacatccgcacgctgcgttcggtaccactcaagctaaagggcgactaccctcaggtgctg
gaggtgcgcggcgaagtgttgatgaaccggcaagatttcgaaaagctgaatcaggcccag
caggcgcgtggagaaaaggttttcgtcaatccgcgcaatgcggcggcgggcagtttgcgt
cagctggatccacgcatcaccgcaaaaaggccgctgcgcttttatgcctatggctggggc
gagatacgtatcgtccatgatgggcaaaccgaattgttccgtcaggaatcgggcagcgcc
gaaatgcctcgcaagacccacgcgcagatgctcgattggctgcaagccctgggcctgccg
gtgaacgattcgcgcaaactggtctgcggcgcacaaggtttgctggatttctacgagcat
atcggcagtacacgcacggcattgccttttgacattgatggtgtggtctacaaagtcgat
tcgctggaagcgcaggaagtgcttggctatgttgctcgcgcaccgcgctttgccattgcg
cacaagtttcccgcacaggaagaaaccactcggctgctgagcatagaagtgcaggtgggg
cgtacgggtgccatcacaccagtggcgcggcttgagcctgtattcgtgggcggggttacg
gtgaccaatgccacgctgcataacgaagacgagatacgccgcaaggatgtgagagtgggc
gataccgtcgtggtgcgacgggcgggtgatgtgattccggaagtgctggccccggtgctt
gatttgcgtccgcctgacaccagtttgtttgtgatgccccggcaatgtccagtgtgtggt
tcagccatagagcggcccgaggacgaggctgtgtcgcgctgcacgggcgggctgttctgt
gcggctcagcgcaagcaaagcctgagccatgccgcgggtcgcaaggctctggatattgag
ggcttgggtgagaaactggtcgatcaactggtggatagcgggcgggtgaagtcgctcgcc
gatttatttacactcaccagcgatgagttggccgcttacgagcgtatgggccgcaagtcg
gccgacaatctggttgcggcactggaaaaagcacgtacaccgtctctggagcgtttgttg
tatgccctggggatccgtcatgtgggggaagccacggcgcgcgatctggcccggcatttt
ggctcggtcgatgcggtcatggctgcagatgaaacggccctgcttcaggtacacgatgtt
ggccaagtggtggcggcatcgatcttgaatttctttgccgagccgcataatcgcgatgtg
attgcgcagttggccgcagcgggcgtgcatgcatcggcgcctgagcaagcctcgggttct
gatttgcgcctggcgggcaagacgctggtattgaccggaaccatgcccaattggacgcgc
gacgaggcgacccggcgtattcttgccgccggcggcaaagtcagcggttcggtgtccaaa
aaaacagcttatgtggtggccggtgaagaggcaggcagcaagctgaccaaggcggcagaa
ttgggcgtgccggtactggacgaggatgggctgaaggcgttgctggggattgcttag
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