Pantoea vagans C9-1: Pvag_2457
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Entry
Pvag_2457 CDS
T01326
Symbol
ygcF
Name
(GenBank) Uncharacterized protein ygcF
KO
K10026
7-carboxy-7-deazaguanine synthase [EC:
4.3.99.3
]
Organism
pva
Pantoea vagans C9-1
Pathway
pva00790
Folate biosynthesis
pva01100
Metabolic pathways
Module
pva_M00988
PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Brite
KEGG Orthology (KO) [BR:
pva00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00790 Folate biosynthesis
Pvag_2457 (ygcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pva03016
]
Pvag_2457 (ygcF)
Enzymes [BR:
pva01000
]
4. Lyases
4.3 Carbon-nitrogen lyases
4.3.99 Other carbon-nitrogen lyases
4.3.99.3 7-carboxy-7-deazaguanine synthase
Pvag_2457 (ygcF)
Transfer RNA biogenesis [BR:
pva03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
Pvag_2457 (ygcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
Fer4_12
Motif
Other DBs
NCBI-ProteinID:
ADO10621
LinkDB
All DBs
Position
complement(2620655..2621326)
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AA seq
223 aa
AA seq
DB search
MFYPINEMFQTLQGEGYYTGVPAIFIRLQGCPVGCSWCDTKHTWEKRADRETSLGDILIK
TVESDAWGDADASTLLRSIEQQGWTARHVVITGGEPAIYDLRPLTTILEQHGFQCQIETS
GTHEIHCSEQTWVTVSPKVNMRGGYDVLPQALSRADEIKHPVARQRDVDALDGLLAGIDD
TKARIIALQPISRKDDATRLCIETCIARNWRLSMQTHKYLNIA
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgttctacccgattaacgaaatgttccagacactgcagggcgaaggttattacaccggc
gtgcctgccattttcatccgcctgcagggctgcccggtgggctgtagctggtgcgatacc
aaacacacctgggaaaagcgggcagatcgggaaacgtctctgggtgatattttgatcaaa
acggtggagagcgacgcctggggcgatgccgatgcctccacactgcttcgtagcatcgaa
cagcagggctggacggcgcgtcatgtggtgatcaccggtggtgaaccggcgatttacgac
ctgcgtccgttaaccacgattctggaacagcacggtttccagtgccagattgagaccagc
ggcactcacgagatccactgttctgagcagacctgggtgactgtctcgccgaaggtcaac
atgcgcggcggctacgatgtgctgccccaggcgctgagccgggccgatgaaattaaacat
ccggtggcacgtcagcgtgatgtggacgcactggatgggctgctggcggggattgacgac
accaaagcccgaatcatcgctctgcagcctatcagccgtaaagacgatgccacccgactc
tgcattgagacctgcattgcacgtaactggcgtctgtcgatgcagacccataaatatctc
aatatcgcctga
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