Pantoea vagans C9-1: Pvag_2478
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Entry
Pvag_2478 CDS
T01326
Symbol
ygdE
Name
(GenBank) Putative RNA 2'-O-ribose methyltransferase mtfA
KO
K06968
23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:
2.1.1.186
]
Organism
pva
Pantoea vagans C9-1
Brite
KEGG Orthology (KO) [BR:
pva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pva03009
]
Pvag_2478 (ygdE)
Enzymes [BR:
pva01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.186 23S rRNA (cytidine2498-2'-O)-methyltransferase
Pvag_2478 (ygdE)
Ribosome biogenesis [BR:
pva03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Pvag_2478 (ygdE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RLMM_N
RlmM_FDX
FtsJ
DUF7328
Spt5-NGN
Motif
Other DBs
NCBI-ProteinID:
ADO10642
LinkDB
All DBs
Position
complement(2647358..2648458)
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AA seq
366 aa
AA seq
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MNKVLLYCRPGFEKECAAEISAKAAESEIYGFPRVKDDSGYVLFECYQFEDAERLARELP
FDELIFARQMLVVGEMLRDLPQEDRITPIVGMLTGVVEKGGELRVEVPDTNEAKELTKFC
RKFTVPLRSALRESKILLNYESPKRPVVHVFFIAPGTCYVGYSIRENSSPFYMGIPRLKF
PSDAPSRSTLKLEEAFHVFIPADEWDERLASGMYAVDLGACPGGWTYQLVQRSMMVYAVD
NGPMAPSLMDTGQVMHEKADGFKFRPPRTNISWLVCDMVEKPVRVANLMTDWLVNGWCRE
AIFNLKLPMKKRYEEVTQNLAMMQERFDENGINVQIRARQLYHDREEVTVHVRRMWAATG
GRRDER
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagttttactctattgtcgtcccggttttgaaaaagagtgtgcggcagaaatc
agcgctaaagcggctgaaagtgaaatctacggctttccgcgggttaaagatgactccggc
tacgtgttgtttgagtgctatcagtttgaagatgctgagcgtctggcgcgtgagttaccg
tttgacgagctgatctttgcccggcagatgctggttgtcggtgaaatgctgcgtgacctg
ccgcaggaagatcgcatcaccccgatcgtcggcatgctgaccggcgtggtggagaagggc
ggcgagctgcgtgttgaagtgcctgacactaacgaagccaaagagctgaccaaattctgc
cgtaagttcaccgtgccgttgcgttcagcactgcgtgaaagcaagattctgctgaactat
gaaagtccgaaacgccctgtggtgcatgtgtttttcatcgcgccaggcacctgttacgtc
ggttactccatccgggaaaacagctcaccgttttacatgggtattccacggcttaagttc
ccctccgatgcaccaagccgctcgaccctcaagctggaagaggcgtttcacgtctttatt
cctgcggatgagtgggatgagcgtttagccagcggcatgtacgccgtggatctgggtgcc
tgtccgggcggctggacctatcagctggtccagcgcagcatgatggtttatgcggtcgac
aacggaccgatggcccccagcctgatggataccggccaggtgatgcacgagaaagccgac
gggtttaaattccgtccaccccgcaccaatatcagctggctggtgtgtgacatggtcgaa
aagccggtgcgtgtggctaacctgatgaccgactggctggttaacggctggtgccgtgaa
gccatcttcaacctgaagctgccgatgaaaaagcgttatgaagaggtgacgcagaatctg
gccatgatgcaggagcgctttgatgagaatggcatcaacgtgcagattcgcgcccgccag
ctttatcatgaccgcgaagaggtaacggtacatgtgcgtcgtatgtgggcagcgaccggt
ggccgtcgcgacgaacgttaa
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