Planctellipticum variicoloris: SH412_000631
Help
Entry
SH412_000631 CDS
T09866
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pvar
Planctellipticum variicoloris
Pathway
pvar03030
DNA replication
pvar03410
Base excision repair
pvar03420
Nucleotide excision repair
pvar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SH412_000631 (ligA)
03410 Base excision repair
SH412_000631 (ligA)
03420 Nucleotide excision repair
SH412_000631 (ligA)
03430 Mismatch repair
SH412_000631 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvar03032
]
SH412_000631 (ligA)
03400 DNA repair and recombination proteins [BR:
pvar03400
]
SH412_000631 (ligA)
Enzymes [BR:
pvar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SH412_000631 (ligA)
DNA replication proteins [BR:
pvar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SH412_000631 (ligA)
DNA repair and recombination proteins [BR:
pvar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SH412_000631 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SH412_000631 (ligA)
MMR (mismatch excision repair)
DNA ligase
SH412_000631 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SH412_000631 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WLD10557
LinkDB
All DBs
Position
811725..813782
Genome browser
AA seq
685 aa
AA seq
DB search
MSKSAQHEIVKLRDAIRRHDRLYYVESRPEISDLEYDRLYKRLEALEAEHPEFADEASPT
RRVGGEPIEGFVTVEHRVPMLSIDNVYNEEELAEFGARVVKQIGPDPVEWLAEYKVDGVA
LSLIYEGGRLLRAVTRGDGRRGDDVTHNARTMGGVPLLLESPFPRVLEVRGEAFISNSDF
AHLRAEHERRGEEPLKNSRNATAGAIKLLDPRECSARKLRFYAHSVGLLEGAEFATHWQF
LEAIGRMGLPMVPGTAVRPSFATACEYTQELMQNLHALDFEVDGIVLKVNDFALREQMGT
TSKSPRWVVAFKWEKYEAITRVEEISVQVGKTGTLTPVAHLAPVEIAGTTVSRASLHNRD
EIERLGVQIGDWVVVEKAGKIIPHVVRVEEHRRDGTQRAFEFPIRCPECQTEVVQDEGGV
YIRCPNPACPAQVRESLRYFASRAAMDIEGLGTELIAKLTQPPALVKSFGDLYRLGEHRD
EVARRLYKAGSKKATGAEEQKLIDGLLAGLEASRGRPLWRLLTALNIRHIGTRTAQILAE
YFGTLDALAEATEEQLAAVNEVGPVIAKSLFDWLHSEVGRTVVEDLRGLGLNLGSATEAR
AKAAQRAAGKLAGKSVVVTGKLTRFKREEIEQLIHDHGGKPAGSVSKKTTFVVAGDDAGS
KLTKAQELGVQVLTEDQFVELLKVD
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagtcggcgcaacacgaaatcgtaaaactgcgggacgcgatccgtcggcacgac
cggttgtactacgtcgagtcgcggccggagatcagcgacctcgagtacgatcggctctac
aagcggctcgaagccctggaggccgagcaccctgagtttgcggacgaggcgagtccgacg
cgccgggtaggcggagagccgattgaaggctttgtcacggtcgagcaccgcgtgccgatg
ctctcgatcgataatgtttacaacgaggaggaactggcggagttcggcgcgcgggtcgtg
aaacagatcggccctgacccggtcgaatggctggcggaatataaagtcgatggcgtggcg
ctgtcgctgatctacgaaggggggcgtctgctgcgggcggtcacgcgcggagacggccgg
cgcggggacgatgtgacgcacaatgcgcgcacaatggggggcgtaccgctgctgctcgaa
tcgccgtttccgcgcgtgctggaagttcgcggcgaggcgttcatcagtaacagcgacttc
gcccatctgcgcgccgagcacgaacggcggggcgaagagccgttgaaaaactctcgcaat
gccacggcgggcgccatcaagctgctggatccccgggagtgttccgcccgaaaattgcga
ttctatgcccacagcgtcggtttgctggaaggggcggagttcgctacgcactggcagttc
ctggaggccatcggcaggatgggcctgccgatggtgccgggaaccgcggtccgcccgagt
ttcgccacggcgtgcgagtacacccaggagctgatgcagaatctccatgcgctggacttc
gaggtggacgggatcgtcctcaaagtcaacgattttgcgttgcgggaacagatgggaacc
accagcaagagtccccgctgggtcgtggcgttcaagtgggagaaatacgaagcgatcact
cgagtcgaagagatctcggtccaggtcggcaagaccgggacgctgacacccgtagcgcac
ctggcgcccgtggaaatcgccgggacgacggtttcccgtgccagtctgcacaaccgcgat
gagatcgagcgattgggagtgcagatcggggactgggtcgtcgtcgaaaaggccgggaag
attattccgcacgtggttcgcgtggaggagcaccgccgtgacggaactcaacgcgcgttt
gagttcccgatccgatgtcccgaatgtcagacggaggtcgtgcaggatgaaggaggggtc
tatatccgctgcccgaatcccgcctgcccggcccaggtccgcgagagcctcagatatttt
gcgtcgcgtgcggcaatggatattgaagggctggggacggaattgattgccaaactgacg
cagccacccgcgctggtgaagtcgttcggcgatctgtaccgacttggggaacatcgggac
gaagtggctcgccggctctataaagcggggagcaagaaagcgaccggcgccgaagagcag
aagttgatcgacggactgctggccggcctggaggcttccaggggccggcccctgtggcgc
ctgttgacagcgctcaacattcgccacatcgggactcgtacggcgcagatcctcgccgaa
tacttcggaacgctcgatgccctggcggaggcgacggaagagcagctcgcggctgtcaac
gaggtcgggccggttattgcgaaatcgctcttcgactggctccacagcgaagtcggccga
accgtcgtcgaggacctgcgggggctggggctgaatctgggctcggcgacagaagcccgg
gcaaaggcggcccagcgggccgcagggaaactggcgggcaagtcagtcgttgtgaccgga
aaattgacgcgattcaaacgggaagaaatcgagcaactcatccacgaccacggtggaaaa
cctgcggggagcgtctcgaagaaaacgaccttcgtcgtcgccggcgacgacgccgggagc
aagctgactaaggcacaggaacttggcgttcaggttctgacggaggatcagtttgtagaa
ttactgaaagtggattga
DBGET
integrated database retrieval system
