Planctellipticum variicoloris: SH412_004111
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Entry
SH412_004111 CDS
T09866
Name
(GenBank) efflux RND transporter permease subunit
KO
K18299
multidrug efflux pump
Organism
pvar
Planctellipticum variicoloris
Brite
KEGG Orthology (KO) [BR:
pvar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvar02000
]
SH412_004111
01504 Antimicrobial resistance genes [BR:
pvar01504
]
SH412_004111
Transporters [BR:
pvar02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
SH412_004111
Antimicrobial resistance genes [BR:
pvar01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexEF-OprN [MD:
M00641
]
SH412_004111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
WLD13936
LinkDB
All DBs
Position
5291292..5294606
Genome browser
AA seq
1104 aa
AA seq
DB search
MFSQFFIDRPIFASVLSIVITLAGGIAVFSLPVTQYPEITPPTVEVSAFYPGANASVVSD
TVAAPIEQQVNGVEGMLYMSSQCTNDGAYSLTVTFRQGTDLNLAQVLVQNRVALAQPVLP
TLVTRRGVTVKKKSPSVLMIVNLYSPEGNRDNLYLSNYATIQLRDELSRLPGVGDITFLG
QRDYSMRVWLDPDKLSSLDLSANDVVHAIEQQNVQVAAGQIGQPPAPSDQAFQFTMTTLG
RLTDATQFADMILHSDPDGRIIRLKDVARIELGALGYDQMCTLDGQASVALSVFQLPGSN
ALDTAASVRKKMAELHTRFPDGVDYSIVYDTTPFIQESVNEVFYSLRDAVVLVALVVLVF
LQGWRAAVIPLIAVPVAIVGTFAAMAAFGFSLNSLTLFGLVLAIGIVVDDAIVVVEAIEH
HIEHGMSPRDAAIRAMQEVSGPVVAVALVLSAVFIPCVFITGIVGQFFQQFALTIAISTV
ISAFNSLTLSPALAVLLLKPRVAGHHEPLPRLAFPIAGAALGYFFGGPLLEPWLAQLPGW
PAAALAPWVAAAIALLAALLLSRLLNRLLAWFFSVFNAAFNVSTGVYVGTIGALLRTNLI
VLGLYGGMLYATWHVFDVTPTGFIPAQDKGYLLVNVQLPDSASLNRTIATMSDIDRLVRK
ISGVNHAVGIAGQSLLLGANAPNFGSFYLMLDDFHHRAHDGLTADVIAVSVKELLDEQIP
DALVHVLGAPPVDGLGTAGGFKLVVEDRGDNGSAALQQSSHAIVDEGMQTPELTALFTSF
RADTPWLFLDIDRYAAKAMGVSISELFNTLQVHFGSLYVNDFNRFGRTWQVNVQGDAAYR
MQIEDLKRLKVRNDEGHMVPLASVATPHETSGPVMVVRYNLYPSAMINLNAAPGYSSGQA
IDRMQALANENLLPSMRAEWTELAFLQLEAGNSAMYAFVLAVVLVFLVLAAQYESWALPL
AVILVVPMCLLCSVAGVLWAHLDVNIFTQIGFVVLVGLACKNAILIVEFARARHDAGESR
RAATLDACRLRLRPIIMTSFAFILGVVPLMIGQGAGAEMRRTLGTAVFWGMLGVTLFGIF
LTPVFYYVIQSVTDWRSSRRTTQS
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgttctcgcagttcttcatcgaccggccgatcttcgcgtccgtgctctccatcgtcatc
actctcgcaggcggcattgccgtcttctcgctgccggtcacgcagtacccggaaatcact
ccgccgaccgtggaagtctccgcattctatccgggagccaacgccagcgtcgtcagcgat
accgtcgccgcccccatcgagcagcaggtcaacggcgtcgaggggatgctctacatgtcc
tcgcagtgcaccaacgacggcgcctactcgctgacggtgacctttcgccagggaaccgat
ctcaatctggcgcaggtgctcgtgcagaaccgggtcgcgctcgcgcagccggtgctgccg
actctcgtcacgcgccgcggcgtcaccgtcaagaaaaaatcccccagcgtgctgatgatc
gtcaatctgtattcccccgagggcaaccgcgacaacctgtatctcagcaactacgcgacc
atccagcttcgcgacgaactctcccgcctccccggagtcggcgatatcacattcctggga
cagcgcgactacagcatgcgcgtctggctcgaccccgacaaactgtcgagtctcgacctc
agcgccaacgacgtcgttcacgccatcgaacagcagaacgtgcaggtggcggccggccag
atcggccagccgcccgccccgtccgaccaggcgtttcaattcacgatgaccacgctcggc
cggctcaccgacgccacgcagttcgcggacatgatcctccactccgatcccgacggtcgc
atcatccggctcaaggacgtcgcccgcatcgaactcggggccctcggctacgaccagatg
tgcacgctcgacggtcaggcctcggtggccctctccgtctttcaattgcccggctccaac
gccctcgacaccgccgccagcgtgcggaagaaaatggccgaactgcacacgcgctttccc
gacggcgtcgactactccatcgtctacgacaccactcctttcattcaggagtcggtcaac
gaagtcttctattcgctgcgcgacgccgtcgtcctcgtcgccctggtcgtgctggtcttc
ctgcagggatggcgggcggcggtgattccgctgatcgccgtcccggtcgccattgtcggc
accttcgccgcgatggccgccttcggcttcagcctgaactcgctcaccctcttcggcctg
gtcctggccatcggcatcgtcgtcgacgatgccatcgttgtcgttgaggcgatcgaacat
cacatcgaacacggcatgtcgccccgcgacgccgcgattcgcgccatgcaggaggtttcc
ggccccgtcgtcgccgtggcgctggtcctgagcgccgtcttcattccgtgcgtcttcatt
accgggatcgtcgggcagttcttccagcagtttgctctgaccatcgccatttcgaccgtc
atctccgcgttcaactccctcacgctcagccccgcgctcgccgtcctgctcctcaagccg
cgagtcgccggacaccacgaacccctgccgcggctcgcgttcccgatcgccggcgccgct
ctgggctatttcttcggcggaccgctgctggagccgtggctcgcgcaactgccgggatgg
ccggcggcagcgctggcgccgtgggttgcggcggcgatcgccctgctcgccgcgctgctc
ctctcccgactgctgaatcgactgctcgcctggttcttctcggtcttcaacgccgccttc
aacgtgtcgacgggagtctacgtcggcacgatcggcgccctgctgcggacgaatctgatc
gtgctgggactctacggcggcatgctctacgccacctggcacgtcttcgacgtgacgccg
accggcttcattcccgcgcaggacaaaggctatctcctcgtcaacgtccagcttccggac
tccgcgtcgctgaatcggacgatcgccaccatgagcgacatcgaccgactcgtccgcaag
atttccggcgtcaaccatgccgtcggaatcgccggccagtcgctcctgctcggcgccaac
gcgccgaacttcggatccttctatctgatgctggacgatttccatcatcgcgcccacgac
gggctgaccgccgacgtgatcgccgtcagtgtcaaggaacttctcgacgaacagattccc
gacgcactcgtccatgtcctcggcgccccccccgtcgacggactcggaaccgccggcggc
ttcaaactcgtcgtcgaggaccggggcgacaacggctcggccgcgctgcagcagtccagt
cacgcgattgtggacgaggggatgcagacgcccgagctcacggccctgttcaccagcttt
cgcgccgataccccgtggctgttcctcgatattgaccgctacgcggccaaagcgatggga
gtgtcgatctccgaactgttcaacacgcttcaagtccacttcggatcgctgtacgtcaac
gacttcaaccgcttcggccgcacctggcaggtcaacgtacagggcgacgcggcctatcgc
atgcagatcgaggacctcaagcgactcaaagtccgcaacgacgagggacatatggtcccg
ctggcctcagtggccacgccgcacgaaaccagcggaccggtgatggtcgtccgatacaat
ctctacccctcggcgatgatcaacttgaacgcggcccccggctacagctccgggcaggct
atcgatcgaatgcaggctctggccaacgaaaacctgctcccctccatgcgggcggaatgg
acggaactggcctttctgcagctcgaagcgggaaactccgcgatgtacgccttcgtcctg
gccgtcgtgctcgtgtttctggtcctggccgcccagtacgaaagctgggcgctcccgctg
gcggtgattctggtcgtgcccatgtgcctcctctgctcagtcgccggcgtgctgtgggcc
catctggacgtcaacatcttcacgcagatcggtttcgtcgtcctcgtcggactcgcctgc
aagaacgcgatcctgatcgtcgagttcgcccgagcccggcacgacgccggagagtcccgc
cgagccgccaccctcgatgcctgccgtctgcgactccgtcccatcatcatgacctccttc
gcgttcattctgggcgtcgtgccgctgatgatcgggcagggggccggcgctgaaatgcgg
cggacgctggggaccgcggtcttctggggcatgctgggagtcaccctcttcggcatcttt
ctgacgcccgtcttttactacgtcatccagtcggtcaccgactggcgctcgtcccgccgg
acaacgcagagctga
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