Pseudoalteromonas viridis: J5X90_09875
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Entry
J5X90_09875 CDS
T07232
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03030
DNA replication
pvb03410
Base excision repair
pvb03420
Nucleotide excision repair
pvb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J5X90_09875 (ligA)
03410 Base excision repair
J5X90_09875 (ligA)
03420 Nucleotide excision repair
J5X90_09875 (ligA)
03430 Mismatch repair
J5X90_09875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvb03032
]
J5X90_09875 (ligA)
03400 DNA repair and recombination proteins [BR:
pvb03400
]
J5X90_09875 (ligA)
Enzymes [BR:
pvb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J5X90_09875 (ligA)
DNA replication proteins [BR:
pvb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J5X90_09875 (ligA)
DNA repair and recombination proteins [BR:
pvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J5X90_09875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J5X90_09875 (ligA)
MMR (mismatch excision repair)
DNA ligase
J5X90_09875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J5X90_09875 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QTL33913
LinkDB
All DBs
Position
1:2267631..2269652
Genome browser
AA seq
673 aa
AA seq
DB search
MSETISKQINELRQQLESYNYQYYVLDQPTVPDAEYDRVMRALIELETQHPDYLTPDSPS
QKVGGAALSKFEQVTHQVPMLSLDNAFDEAEFNAFNRRIKERLLHNDELDFCCEPKLDGL
AVSILYRDGVLVQAATRGDGQVGENITENVKTIRNIPLRLRGDNIPAELEVRGEVFMDKA
GFARLNETAAKRDEKTFANPRNAAAGSLRQLDPKITAKRPLMFYAYSMGVVQGAELADTH
YAQLQQLKDWGLPMCPQTKRVTGASAAYQYYQAIMAERDALPYEIDGVVIKVDNKPFQEQ
LGFVARAPRWAIAFKFPAQEELTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLH
NRDEIDRLGVKVGDTVIIRRAGDVIPQITQVVLEKRPEDARDITFPDTCPVCDSHVERVE
GEAVARCTGGLVCRAQRKEAIKHFASRKALDIDGLGDKIVEQLVERELITTPAELFTLRQ
GHFESLERMGPKSAKNLVGALEEAKQTTLAKFLYALGIREVGEATAQNLANHYLTLEKVM
NASIESLQEVSDVGVVVAQHIHAFFSEPHNQKVVSDLLEQGLHWPEITAKAESEQPLAGL
TYVLTGTLSQLNRNDAKARLQALGAKVSGSVSKNTHALVAGEKAGSKLTKAQDLGIDILD
EAALIALLDSHQG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaactatcagcaaacaaatcaatgaattaagacaacagttggaaagttataac
taccagtactatgtcttggatcagcccactgtacccgatgccgaatatgaccgggtaatg
cgcgctctgattgagctggaaactcagcatcctgactatttaaccccggattctccctca
caaaaagtgggtggtgctgcgctgagcaaatttgagcaggtaacgcatcaggtgcctatg
ttgtctctggacaatgcattcgatgaggctgagttcaatgcgtttaatcgtcgcatcaaa
gagcgcctgctgcacaacgacgagctggatttttgttgcgagccaaagctggatggtctg
gccgtgtcgattctttaccgtgatggggtgctggttcaggccgcaactcgcggtgatggt
caggtaggtgaaaatatcaccgaaaacgtgaaaaccatacgtaatattccattgcgtttg
cgtggtgacaatattccggctgagctggaagtacgtggtgaagtcttcatggacaaggcc
ggctttgcacgattgaacgaaaccgcagcaaagcgtgatgaaaaaacctttgcgaaccca
cgcaatgcagcggcgggaagcttgcgtcagctggatcctaaaataaccgccaaacgcccg
ctgatgttttacgcctattcaatgggcgtggtgcagggcgctgagctggctgatacccat
tatgcgcaattgcagcagttaaaagactggggcttgcctatgtgcccgcaaactaagcgg
gtaacaggcgccagcgcggcttatcaatactaccaagccattatggccgagcgcgacgcg
ttgccgtatgaaattgatggcgtggtcatcaaggttgataataaaccgtttcaggagcag
ctaggctttgttgcgcgtgcaccgcgctgggccattgcatttaaatttccggctcaggaa
gaattaacgcagttgctggatgtggagtttcaggtaggccggaccggcgccatcacccca
gttgcgcggctggagccggtatttgttggcggcgtgaccgtctcgaatgcgactttgcac
aaccgtgacgaaatcgaccgtctgggtgtcaaagtcggtgataccgtgatcatccgacgc
gccggtgatgtgatcccgcagatcacccaggtggtgctggaaaaaaggcctgaagatgcg
cgcgatatcactttcccggatacctgtccggtatgtgattcccacgttgagcgtgttgaa
ggtgaagccgttgcgcgttgcaccggtggcctggtgtgccgcgcacaacgtaaagaagcg
ataaagcactttgcgtcgcgtaaggcgctggacatcgatggcctgggcgacaagattgtt
gagcaactggttgagcgggaactgatcaccacgccggcggaattatttaccctgcgtcag
ggccattttgagtcactggagcgcatgggccctaaatcagccaagaacctggtgggcgcg
cttgaagaggccaaacaaacgaccttggccaagtttttatatgcccttgggatccgcgaa
gtgggcgaagccacggcacaaaacctggcaaatcactatctgacgcttgaaaaggtgatg
aatgcctccattgagagtttacaggaagtaagtgatgtgggtgtcgtggttgctcagcat
attcacgcgtttttcagtgaaccacacaatcaaaaagtggtgagcgatctacttgagcaa
gggttgcactggcctgaaattactgcaaaagcagaaagtgagcagccactggctggcctg
acttacgtattgacgggcacgctgagccagcttaatcgcaacgacgctaaagcgcgatta
caggcacttggagctaaagtgtccgggagtgtctctaagaacacgcacgcactggtggca
ggcgaaaaagcggggtctaagctaaccaaggcgcaagatctggggatcgatatcctggat
gaagcagcactgattgcattgcttgactcacatcaggggtaa
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