Providencia vermicola: G3341_07485
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Entry
G3341_07485 CDS
T06449
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pvc
Providencia vermicola
Pathway
pvc03030
DNA replication
pvc03410
Base excision repair
pvc03420
Nucleotide excision repair
pvc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G3341_07485 (ligA)
03410 Base excision repair
G3341_07485 (ligA)
03420 Nucleotide excision repair
G3341_07485 (ligA)
03430 Mismatch repair
G3341_07485 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvc03032
]
G3341_07485 (ligA)
03400 DNA repair and recombination proteins [BR:
pvc03400
]
G3341_07485 (ligA)
Enzymes [BR:
pvc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G3341_07485 (ligA)
DNA replication proteins [BR:
pvc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G3341_07485 (ligA)
DNA repair and recombination proteins [BR:
pvc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G3341_07485 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G3341_07485 (ligA)
MMR (mismatch excision repair)
DNA ligase
G3341_07485 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G3341_07485 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
HHH
Nlig-Ia
DZR_2
RNA_ligase
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QIC15551
LinkDB
All DBs
Position
1694449..1696464
Genome browser
AA seq
671 aa
AA seq
DB search
MTTKQYLETLKQQLRHHEYQYHVLDAPEIPDAEYDKLMQELKGIEAEHPEWITSDSPTQR
VGAAPLAAFDTVRHEVPMLSLDNVFDEESYLAFDKRVRDRLKNNQEQTFCCELKLDGLAV
SLLYENGELVQAATRGDGTVGENITSNVRTIRAIPLRLVGDNIPTRVEIRGEVFMPQKGF
EALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEEGSLPDTHYE
RLMQFKAWGLPVSDYVQLRTGAQAVLDFYHEIEKARPTLGFDIDGVVIKINAIATQEELG
FVARAPRWATAFKFPAQEQMTLLKDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNA
DEIERLGVHIGDTVVIRRAGDVIPQIVSVVESERPADSREIVFPTHCPVCGSDVERVEGE
AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLYQLTAGI
LTGLDRMGPKSAQNLVDALNKSKSTTLARFIYALGIREVGEATAANLAAHYGTLEAVMTA
DEESLKTVQDIGHVVAKHVVNFFREEHNQAVIHDLVHKANIHWPQAVAVDASTIDSPFAG
KTVVLTGSLSRLTRDEAKDKLVALGAKVSGSVSKKTDLVIAGEAAGSKLAKANELGIPVI
DEDELIALLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaaaacaatatcttgagacactcaaacagcaattacgccatcatgaatatcaa
taccatgtattggatgcacctgaaattcccgatgctgaatatgacaaattgatgcaagag
ctcaagggtatcgaagcagaacatcctgagtggatcaccagtgattctccaactcaacgc
gtaggggccgcaccattggccgcatttgatacggtgcgccatgaagtgcctatgttgtcg
ctggataacgtatttgatgaagaaagctatcttgcgttcgataagcgtgtcagagataga
ttaaaaaacaatcaagaacaaacattttgctgtgaactaaaattagatggccttgcggtg
agtctgttgtatgaaaatggtgaacttgtccaagcagcgacgcgtggtgatggtactgtc
ggtgaaaatatcacctcaaatgtccgaacgattcgtgccattccgctacgtttggtaggt
gataacattcctacacgagtggaaattcgcggggaagtgttcatgccacaaaaaggcttt
gaagctttaaatgaagaggctcgccgtacaggtggcaaagtgtttgctaacccacgtaat
gcggcagcgggctcattacgtcaactcgacccacgaattacggctaaaagaccattaact
ttctattgttacggcgtcggcttggtagaagaaggctctttacccgatacgcattatgag
cgtctcatgcaatttaaagcgtgggggctaccggtcagcgattatgtccaattacgtaca
ggtgctcaggccgtattagacttctatcatgagatagaaaaagcgcggccaaccctcggc
tttgatattgatggcgtagtgattaaaattaacgccatagcgactcaggaagagttaggt
ttcgttgcacgtgccccgcgttgggcgacagcctttaaattccctgcacaagagcaaatg
acccttttaaaagacgtggaattccaagttggtcgtacaggcgctattacgcctgtggct
cgtcttgaacctgttcaagtggcgggtgtcatcgtcagtaatgctacgctacataacgct
gacgaaattgagcgtttaggtgtgcatatcggtgatactgtcgtgatccgtcgtgccggt
gatgttattcctcaaattgttagtgtcgtcgaatcagaacgtcctgctgatagccgtgaa
attgtcttcccaacccattgccctgtctgtggttcagacgttgaacgcgtagaaggtgag
gcagttgcacgttgtactggcggtttgatttgtggtgctcagcgcaaagaggcacttaaa
cattttgtttcccgtcgagccatggacgtcgatggaatgggcgataaaatcatcgaccaa
ttagtcgaaaaagaatatgtgaaaacccctgctgacctgtatcaattaaccgcggggatt
ttgacggggcttgatcgtatggggccgaaatcagcacaaaatttggtcgatgcattaaac
aaatccaaatcaaccacattagctcgttttatctatgcgttaggtattcgtgaagtggga
gaggcaaccgctgcaaatttagcggcacactatggcacgttagaggcagtgatgacggct
gatgaagagtccctaaaaaccgtacaagacattggtcatgttgttgcgaagcacgtagtt
aactttttccgtgaagagcacaaccaagctgttattcatgatctcgtacataaagcgaat
atccattggccacaagcggttgctgtagatgcgagtactatcgacagtccatttgcagga
aaaaccgttgtcttaactggctctctcagtcgactcactcgcgatgaggcgaaagataaa
ttagttgccttgggcgcgaaagtttctggtagcgtttctaagaagacggatttggttatt
gcgggtgaagctgcgggttcaaaactggcgaaagcgaatgagttaggtatacccgtcatt
gatgaagatgagcttattgcgttattaggtgcctaa
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integrated database retrieval system
