Pandoraea vervacti: UC34_11020
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Entry
UC34_11020 CDS
T03688
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pve
Pandoraea vervacti
Pathway
pve03030
DNA replication
pve03410
Base excision repair
pve03420
Nucleotide excision repair
pve03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UC34_11020 (ligA)
03410 Base excision repair
UC34_11020 (ligA)
03420 Nucleotide excision repair
UC34_11020 (ligA)
03430 Mismatch repair
UC34_11020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pve03032
]
UC34_11020 (ligA)
03400 DNA repair and recombination proteins [BR:
pve03400
]
UC34_11020 (ligA)
Enzymes [BR:
pve01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UC34_11020 (ligA)
DNA replication proteins [BR:
pve03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UC34_11020 (ligA)
DNA repair and recombination proteins [BR:
pve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UC34_11020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UC34_11020 (ligA)
MMR (mismatch excision repair)
DNA ligase
UC34_11020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UC34_11020 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AJP57400
UniProt:
A0ABM5SY01
LinkDB
All DBs
Position
2431435..2433561
Genome browser
AA seq
708 aa
AA seq
DB search
MSQTSVPGQGTNAHTAADATAAAQRAAELRIELARHNRAYYEDDAPLIPDAEYDRLFGEL
AALENDFPELQRPDSPTQRVGGKPVEGFAPVVHRVPMLSLNNGFEDEDVEAFDRRVSDGL
RDATRAGAPSDDLFGPQDAPVEYAAELKFDGLAIALRYEQGVLVQAATRGDGTTGEDVTA
NIRTIKKIPLKLKSDNPPDVLEVRGEVLMFRADFDKLNQAQEAAGEKVFVNPRNAAAGSL
RQLDSKITARRPLSFFAYGVGELVGVPMPETHSALLDWYVTLGIPVNDRREVVKGAAGLL
KFYREVGEARVSLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTTLLDI
EVQVGRTGAITPVARLAPVFVGGATVTNATLHNEDEIRRKDVMIGDTVIVRRAGDVIPEV
VGSVPDRRPADARAFVMPTACPVCGSAIEKLPDEAIARCTGGLICAAQRKQALLHFAQRR
ALDIEGLGDKLVEQLVDQQIIRTPADLFKLGVAKLAALDRMADKSATNLVAALDKARHTT
LARFIFALGIRHVGEATAKDLARHFGKLDNLIGVCKRDSDLTELLAVPDVGPIVAESINN
FFCEDHNVEVIEQLRAAGVTWPESEPAAAAPLPLAGKTFVLTGTLPTLSRDEAKAMLEAQ
GAKVAGSVSAKTDYVVAGAEAGSKLAKAEALGVPVLDEDAMRAMLAAL
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaacttccgtaccgggtcagggcacgaacgcccatacggctgccgacgctacg
gccgctgcacaacgcgcggccgaactgcgcatcgagttggcgcgtcacaaccgtgcctat
tacgaagacgacgcgccgctgattcccgacgccgaatacgaccgtctgtttggcgaactc
gccgcgctggaaaatgattttcccgaattgcagcgtcccgactcaccgacgcagcgcgtg
ggcggcaaacctgtcgaaggtttcgcgccggtggttcaccgcgtgccgatgctctcgctc
aacaatggcttcgaagacgaggatgtcgaggcgttcgatcgccgcgtgtccgacgggctg
cgcgatgcgacacgcgccggcgcaccgtccgacgatctgttcggcccgcaggacgcgcca
gtcgaatacgccgccgagctgaagttcgacggcctggcgattgccttgcgctacgagcag
ggggtgctggtgcaggccgcgacacgaggcgacggtacgacgggagaagatgtcacagct
aacattcggaccatcaagaagattcccctgaagctgaagtcggacaatccgcccgacgta
ctggaagtgcgtggggaagtgttgatgttccgcgccgacttcgacaagctgaaccaagcg
caggaagcggccggcgaaaaggtgttcgtcaatccgcgcaatgcggcggcaggcagcttg
cggcagctcgactcgaagatcacggccaggcgtccgctgtccttcttcgcctacggcgta
ggggaactcgttggcgtgccgatgcccgagacgcactcggcgttgctcgactggtatgtc
acgctcggcattccggtgaacgaccgacgcgaagtcgtgaagggcgctgcgggactgctg
aagttctatcgcgaagtcggcgaggcacgggtatcgctgccctatgacatcgacggtgtg
gtctacaaggtcaatcgtcgcgacgagcaggatcggctcggattcgtgtcgcgagcgccg
cgcttcgcactggcgcacaaattcccggcgcaggaggcgttgaccacgctgctcgatatc
gaggtgcaggtcggacgcacgggcgctattaccccggtggcccgtctggcgccggtgttc
gtcggcggcgcgacggtcacgaatgccacgttgcataacgaggacgagattcgtcgcaag
gacgtgatgatcggcgataccgtcatcgtgcgtcgtgcgggtgacgtgattcccgaggtc
gtcgggtcggtgccggatcgtcgtccggccgatgcacgggcattcgtcatgcccacggcg
tgtccggtgtgcgggtccgccattgaaaaattgccggacgaggcgatcgcccgttgcacg
ggcggattgatttgcgctgcgcagcgcaagcaggcgctactgcacttcgcgcaacgtcgt
gcgctcgatatcgaggggctgggcgacaaattggtcgaacaactcgtcgatcagcagatt
attcgaacgcccgcagatctgttcaagctgggcgtagcgaagctggcggcactcgaccgg
atggcggacaagtcggcgaccaatctcgtcgccgcgctggacaaggcgcgtcacacgacg
ctcgcacgctttatcttcgcactgggcatccgtcatgtcggcgaggcgacggcgaaggat
ctggcgcggcacttcggcaagctcgacaacctgatcggggtgtgcaaacgcgactccgat
ctgacggaactgcttgccgttccggacgtcggacccattgtggccgagtcgatcaacaat
ttcttctgcgaagatcataatgtcgaagtgatcgagcaactgcgtgccgctggtgtgaca
tggccggaatccgaacctgccgctgcggcgccgctgcccctggcgggcaagacgttcgtg
ctgaccggcacgttgccgacgctgtctcgcgacgaggcgaaggccatgctcgaagcgcag
ggagcgaaggttgccggctccgtttctgcaaaaaccgactatgtcgtggcgggggcggag
gcgggcagcaagttggcgaaggcagaggcactgggtgtgccggtgctcgacgaggatgct
atgcgcgcgatgttggccgcgctttga
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