Prevotella veroralis: J5A55_02655
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Entry
J5A55_02655 CDS
T08190
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pvf
Prevotella veroralis
Pathway
pvf03030
DNA replication
pvf03410
Base excision repair
pvf03420
Nucleotide excision repair
pvf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J5A55_02655 (ligA)
03410 Base excision repair
J5A55_02655 (ligA)
03420 Nucleotide excision repair
J5A55_02655 (ligA)
03430 Mismatch repair
J5A55_02655 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvf03032
]
J5A55_02655 (ligA)
03400 DNA repair and recombination proteins [BR:
pvf03400
]
J5A55_02655 (ligA)
Enzymes [BR:
pvf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J5A55_02655 (ligA)
DNA replication proteins [BR:
pvf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J5A55_02655 (ligA)
DNA repair and recombination proteins [BR:
pvf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J5A55_02655 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J5A55_02655 (ligA)
MMR (mismatch excision repair)
DNA ligase
J5A55_02655 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J5A55_02655 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
BRCT_2
DNA_ligase_ZBD
Nlig-Ia
Lar_restr_allev
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QUB41168
LinkDB
All DBs
Position
1:640014..642044
Genome browser
AA seq
676 aa
AA seq
DB search
MNDEIQSLVEQLNAASDAYYNGREEIMTNYEWDAAFDRLKKLEEETGIILPDSPTQNVSA
DNLTGQKEEHEFPALSLAKTKKVAELAKWAENRPIWLSWKLDGLTLVVTYDNGKLTKVVT
RGNGHIGTNITHLSKAIDGILQAIPYKGHLVIRGEAVISYPDFEQFNMESEEEYANPRNL
ASGSLTLKNINEVKERHIRWIPFTLVYEEEEIISWGNRMAWLEQQGFKPVDRELIEQPTE
ANIQAVIDCWTERVTGKSSSPFPYPVDGLVITYDDTAYAATGSVTGHHATRAGYAFKWQD
ESAETELEYIEWSCAASTISPVAVFKPVELEGTTVKRASLCNISECERLGIGDKGTKIAV
IKANKIIPKVINVVERLGVFHIPEVCPVCQSATEVTESESSGTKTLHCTNTHCPAKQLKK
FGRFVSKEGINIDGLSEQTIQKFINLGWVREYADLFHLNNHASELRTMDGFGDKSVSKLL
TAIEKARNVEAHRLLFALNIPLIGRDVCNRLLSAYQIADLFHTATEATTEDVFATIAGIG
PEKSASFVRWMKDKDNYSMMQQLLVELNISQSSSAPTGNSCEGLTFVITGDVHHYKNRNE
LKAYIENQGGKVTGSVSKSTSFLINNDIESSSGKNKKAKELSIPIISEEEFIARFVQMDE
NKLALESSPITEGSLF
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgaaatacaatcccttgttgaacaactcaacgctgcatctgatgcttattat
aatggtcgagaagaaatcatgaccaactatgagtgggatgcagcctttgaccgattaaag
aagttagaagaggaaacgggaattatcttacctgattctcctacacaaaatgtatctgct
gataatcttactggtcagaaagaggaacatgagttccctgctctctccctcgcaaagaca
aagaaggtggcagaacttgcaaaatgggcagagaatagacctatttggctctcatggaag
ttagatggtttgacacttgttgttacatacgataatgggaaactgacaaaggttgtcacg
cgtggtaatggtcacattgggacaaatattacccatctatctaaggctattgacggaatc
ctacaggcaataccttataaaggacatcttgtgattcgtggtgaggctgttatcagttat
cctgacttcgagcaattcaatatggaatcagaagaggaatatgctaatcctcgtaacctt
gcatcaggttcattgacgttgaagaacatcaatgaagtgaaagaacgccatatccgttgg
attccgtttacccttgtctatgaagaagaagagattatctcatggggcaatcgtatggca
tggctagaacaacaaggctttaagccagtagacagagaactcattgagcaacccacagaa
gcaaatatccaagctgtcatcgattgttggacagaacgggtaacaggcaagagttcctca
cctttcccctatcctgttgatggactggtcatcacatacgatgatactgcctacgccgca
acaggttcagtaacaggtcatcatgcgacacgtgctggttatgctttcaaatggcaggat
gagagtgcggaaacagaattagaatatatagaatggtcttgtgcagcctcaaccatatct
cccgttgccgtattcaagcccgttgaactagaaggaacaactgtaaagcgtgcctcgctc
tgtaatatctctgaatgtgagcgactggggattggcgataagggaacaaagatagctgtt
atcaaagcaaataagattatcccaaaggtaatcaatgttgttgagcgattgggcgtattc
catatacctgaggtatgccctgtatgccaatcagcaacagaggtaactgagagtgagagt
agtggaacaaagacgttgcattgcaccaacacgcattgtcctgcaaagcaactcaagaag
ttcggacgctttgtttcaaaggaaggaatcaatattgatggactatccgaacagacaata
cagaagtttatcaatcttggttgggtacgtgaatatgcagacttattccatctcaacaac
catgcttcagaactacgaacaatggatggatttggagacaagagtgttagcaagttactt
acagccatagagaaggctcgcaacgtagaagcgcatcgcttactctttgcattaaatata
ccacttatcgggcgtgatgtttgcaatcgtttgttatcagcttatcaaatcgcagaccta
ttccatacagctactgaagctaccaccgaagatgtctttgctactattgcaggcattggt
ccagaaaagagtgccagctttgttagatggatgaaggataaagataactattctatgatg
caacagctattagtagaactcaatattagtcagtcttcatctgcgccaactggtaatagt
tgcgaaggactaacgtttgttatcactggcgatgtgcatcattataagaatcgtaatgag
ctgaaggcttacattgagaatcaagggggcaaagtaacaggctctgtctctaaatcaact
agtttccttattaacaacgatatagaaagttcttctggcaaaaataaaaaggcaaaggaa
ctctctattccaattatctctgaggaagaattcattgctcgattcgtgcagatggacgag
aataaactcgccttagaatcctctccaatcaccgaaggatcactattctaa
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