Panicum virgatum (switchgrass): 120641618
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Entry
120641618 CDS
T07260
Name
(RefSeq) very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like
KO
K10703
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase [EC:
4.2.1.134
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00062
Fatty acid elongation
pvir01040
Biosynthesis of unsaturated fatty acids
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01212
Fatty acid metabolism
Module
pvir_M00415
Fatty acid elongation in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00062 Fatty acid elongation
120641618
01040 Biosynthesis of unsaturated fatty acids
120641618
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pvir01004
]
120641618
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.134 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
120641618
Lipid biosynthesis proteins [BR:
pvir01004
]
Fatty acid synthase
Component type
120641618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTPLA
Motif
Other DBs
NCBI-GeneID:
120641618
NCBI-ProteinID:
XP_039773741
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All DBs
Position
7K:complement(45377413..45389384)
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AA seq
306 aa
AA seq
DB search
MYVEHSYEKRGPLPQWQSSCKHLFCPCYPEDGYDLANIDSKSLLLSMKKLQQPDGSQFRT
PVTVTLGVFFLSAAPGVLFLSAAPEMAGVGSAVRRIYLAVYNWIVFAGWAQVLYYTILAL
WESGHEDVYGAVERPLQFAQTAAIMEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSF
PETRSNILVTSLVISWSITEIIRYSFFGMKEIFGFAPSWLLWLRYSTFMVLYPTGISSEV
GLIFAALPHMMASQRYCLRLPNKWNFSYDYSYTSILALAVYIPGSPHMFKYMLSQCKKAL
SKSKTV
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgtacgtggaacatagctatgaaaagagaggacccttgccacaatggcagtcatcttgc
aagcacttattctgcccttgctatcctgaagatggctacgatctagcaaatattgatagc
aagtcacttttattgtctatgaaaaagctccaacaaccagatggaagccaattcaggacc
ccggtcacagtcaccctcggtgttttcttcctctctgcggctccgggcgttttgttcctc
tcagcggctccggagatggcgggcgtcggctcggcggtgcggcggatctacctggctgtc
tacaattggatagtcttcgccggatgggcgcaggtgctgtactacacgattttggcgctg
tgggagagcggccatgaggatgtctacggcgctgtcgagcggccgctgcaatttgcgcag
acagctgccatcatggagattctacatggacttgtaggtcttgtgaggtctccagtctct
gcaactcttcctcaaattggatcaaggttgttccttacatggggcatcttgtggagtttt
cccgagactcgctctaatattcttgttacttcattagtcataagttggtccatcactgag
atcattagatactctttctttggtatgaaggagatatttggtttcgcaccttcatggcta
ttgtggctaaggtatagcacttttatggtattataccctactggtatctcgagcgaggtt
ggtctaatttttgctgctctacctcatatgatggcatctcagagatattgtctaaggttg
ccaaacaaatggaatttctcttacgattactcatatacatctattcttgctctcgcggtt
tacattccaggaagtccgcatatgtttaaatatatgctttcccagtgtaagaaggcattg
tcaaagtcaaaaaccgtgtaa
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