KEGG   Panicum virgatum (switchgrass): 120649760
Entry
120649760         CDS       T07260                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RBX1-like
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03420  Nucleotide excision repair
pvir04120  Ubiquitin mediated proteolysis
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120649760
   04120 Ubiquitin mediated proteolysis
    120649760
  09124 Replication and repair
   03420 Nucleotide excision repair
    120649760
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120649760
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120649760
Enzymes [BR:pvir01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     120649760
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   120649760
  Multi subunit type E3
   SCF complex
    Ring finger protein
     120649760
   Cul2 complex
     120649760
   Cul3 complex
     120649760
   Cul4 complex
     120649760
   Cul7 complex
     120649760
   Cul8 complex
     120649760
   Cul9 complex
     120649760
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      120649760
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      120649760
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4 zf-C3HC4_2 zf-RING_11 zf-RING_16
Other DBs
NCBI-GeneID: 120649760
NCBI-ProteinID: XP_039782572
LinkDB
Position
1K:48433220..48435685
AA seq 114 aa
MDKGGVAVAPAPAPAGSSAASGKKAKRFDIKKWNAVSLWAWDIVVDNCAICRNHIMDLCI
ECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
NT seq 345 nt   +upstreamnt  +downstreamnt
atggacaagggcggcgtcgcggtggccccggccccggccccggcgggctcctccgccgcc
tcggggaagaaggccaagcgcttcgacatcaagaagtggaacgccgtctccctctgggcc
tgggacatcgtggtggacaactgcgccatctgccgcaaccacatcatggacctctgtatc
gagtgtcaggcgaaccaggcgagcgccaccagcgaggagtgcaccgtcgcttggggagtt
tgcaaccatgcattccacttccactgtatcagtcgttggctcaagactcgccaagtgtgc
cctctagacaacagtgagtgggagttccagaagtatggtcactag

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