Panicum virgatum (switchgrass): 120650282
Help
Entry
120650282 CDS
T07260
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
KO
K16189
phytochrome-interacting factor
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120650282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120650282
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
120650282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
120650282
NCBI-ProteinID:
XP_039783267
LinkDB
All DBs
Position
9K:complement(14594517..14599499)
Genome browser
AA seq
506 aa
AA seq
DB search
MGDTSRPLGDDDDLIELLWCNGHVVMQSQNNRKLPPPRPEKPAGAAAPAPAPAAQDDEAG
LWFPFALADSLDKDIFSEFFCEAPAPAAAAAPVPATPGVEDGKPCRDVPVEDDDRRGGAC
AASGASSDLMPPPKSAPVSGSRQQTSLADGGDNAGDLSDLVRAGSAGKVAAEAGASSMRS
AIGSSICGSNQVLVQRAACRASGAACGGGGGCSGSALPSAMGSANANASGRGNEATVASS
SGRSNYCFGTTTTTTTTEPTSNSNWSSKRKRLDTEDSENPSEDAESESAAMLARKPPQKL
TAARRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASLLDEAIEYLKSLQLQL
QMMWMGSGIAAPPVMFPGVHQYLPRMGVGMGAAAMPSMPRMPFLPPQPVVPNAPVHNPVP
LSPAAYRGHMPAVGITEPYAHYLGVNHLQPTPSQHFAQGAVGYYPLGAKAAAVQQSPALH
HVPGGGGAAAVPGVLPPESAPSRGPG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgggggacacctccaggccgctcggcgatgacgatgacctcatcgagctgctctggtgc
aacggccatgtcgtcatgcagagccagaacaaccggaagctaccgccgccgaggcccgag
aagccggcgggggcagccgctccagcccccgcgccggcggcgcaagatgacgaggccggc
ctctggttcccgttcgcgctggccgactcgctcgacaaggatatcttctcggagttcttc
tgtgaagcgccagcgccggcggcggcggcggctccggtgcctgcaaccccaggcgtcgag
gacggcaagccctgcagggacgtcccggtggaggacgacgacaggcgcggcggggcatgc
gcggcgtccggggcctcgagcgacctgatgccgccgcccaagtcggcgcccgtgtccggg
tccaggcagcagacgagcctggcggacggcggcgacaacgccggcgacctctccgacctc
gtccgggccggcagcgcggggaaggtggcggcggaggccggcgcgtcgtcgatgcggagc
gcgatcgggtccagcatctgcgggagcaatcaagtgctggtgcagcgcgcggcgtgccgc
gcgtccggcgctgcctgcggcggcggcggcgggtgctccggcagcgcgctgccgtcggcg
atggggagcgcgaacgcgaacgccagcggcaggggcaacgaggccacggtggcgtcctcg
tcggggcggtccaactactgcttcggcaccaccaccaccaccaccaccaccgagccgacg
agcaatagcaactggagcagcaagcggaagcggctcgacaccgaggactccgagaacccc
agcgaggacgcggagtcggagtccgccgcgatgctggcgcgcaagccgccgcagaagctg
acggcggcgcggaggagccgcgccgccgaagtgcacaacctctccgagaggaggagacgg
gacaggatcaacgagaagatgagagccctgcaagagctcatacctcactgcaacaagaca
gacaaggcgtcgttgttggacgaggcgatcgagtacctcaagtcgctgcagctgcagctg
cagatgatgtggatgggcagcggcatcgcagcgccgccggtgatgttccccggcgtgcac
cagtacctgccgcggatgggcgtcggcatgggcgccgcggcgatgccgtccatgccgcgg
atgccgttcctgccgccgcagccggtggtgcccaacgcgcccgtccacaaccccgtgccg
ctctcgccggcggcctaccgggggcacatgccggcggtcggcatcaccgagccctacgcg
cactacctcggcgtcaaccacctgcagccgacgccgtcccagcatttcgcgcagggcgcc
gtgggatactacccgctgggggcgaaggccgccgccgtgcagcagagtccagcgctccac
cacgtgcccggcggcggcggcgccgcggcggtgccgggggtgctgccgcctgaaagcgct
ccgagcagaggaccaggatga
DBGET
integrated database retrieval system
