KEGG   Panicum virgatum (switchgrass): 120650298
Entry
120650298         CDS       T07260                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120650298
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120650298
Enzymes [BR:pvir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     120650298
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     120650298
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 120650298
NCBI-ProteinID: XP_039783294
LinkDB
Position
9K:14807880..14829038
AA seq 1617 aa
MASALRVESGRDSTSTRGKYQQGGSLAAAGTQNPRRREPNWENLKRKFSSPLPAAQPTPE
AASSPATVAAVAAAASASCRSSPAVSQGAAPRRHCVFRGRLGGLAPPLGLSAPAPAPSAG
AIERTHPQPQGAAPPGRPLGTGARHQSCSHGRAGRSLEARSSTSSWMELNHELPRATLNA
IKFDLMTSTDMEKLSSISIIEVSDVTSPKLGLPNGSPQCETCGSQSERDCDGHFGVTKLA
ATVHNPYFIDEVVHFLNQICPGCLSPRESMYLKRLESEPVRTTCKYCSKDGSKLYPSVIF
RTLSSPRVLLSKSKLHRSPSVMERISIVAEASDRVSNKSKGKGLLEGLPQDYWDFVPSEN
QQLQSTMTKIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGL
SDGRLTFDDRTKAYKRMVDVSRRIDDYRQHPQFSVLASSLVSSRVSECLKSSKLYSRKTE
GETTTDTYGMKWLKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPEGLASNLVVSEHVSSY
NLENMNLKCNLHLLAKEELFIRRNGKLMFIRKANQLEVGDIAYRPLQDGDLILINRPPSV
HQHSLIALSTKILPIQSVVSINPLCCTPFLGDFDGDCLHGYIPQSIQSRIELGELVSLHQ
QLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSKTPAPAVVKSMD
FQGSLWTGKQLFSMLLPSGMNFSCDRKLHIIDSEVLTCSSGSSWLQNSTSGLFSVMFKQY
GHKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLTEGVKLALDEAEEAFQI
KQILLDPINIPVLKCHDETEDVTYRQSDYIQNNLSIVRSSIMAFKDVFSDLLKMVQQQVS
NDNSMMVMINAGSKGSMLKYAQQTACVGLQLPASKFPFRIPSQLSCTSWNMQKSLNCEAE
GTNGRVGGQNLYAVIRHSFIEGLNPLECLLHAISGRANFFSEHADVPGTLTRKLMYHLRD
LHVAYDGTVRSSYGQHITQFSYDTADDMYCNRDRIDEIGAPVGSWAASSVSEAAYGALDH
PVNGLEDSPLMNLQEVFKCHKATNSGDHAGLLFLSKHLKKYRYGLEYASLEVKNHLERVN
FSDLVETVMIIYDGCETTRKGGPWTTHFHISKEMMKKKRLGLGFVVEELTEEYDTTRNQL
NNAIPSVRISKRKCSVGDECVQNSTCCITVVAQAESNSMAQLDTIKKRVIPILLDTLLKG
FLEFKDVEIQCQHDGELLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYDI
FCSYGIDSAWKCFVEYLKSVMADIGRNVRREHLLVVADSLSVTGQFHALSSQGLKQQHTR
LSISSPFSEACFSRPAQSFINAAKQCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHVGKP
HEPEENESIYGFLCDPAVRNFEKNHMDTCRHSTENSLRCRLACKSNGNATVNGGDITIDQ
GFLHAKVGVWNNIIDMRTSLQNMLREYPLNGYVMEPDKSLLVEALKFHPKGAEKIGVGVK
EIKIGLNPSHPGTRCFILLRNDDTTEDFSYNKCVQGAANSISPQLGSYFEKKLYRRG
NT seq 4854 nt   +upstreamnt  +downstreamnt
atggcttccgctttacgtgtagagtcgggccgcgattccacttccacgagggggaaatac
cagcaggggggctctctggcagcggcaggcacgcaaaacccgagaaggcgagaaccaaac
tgggaaaacctcaaaaggaaattctcctcgccccttccagcagcgcagccgacgcccgag
gcggcgagctcgccggcgacggtagccgccgtcgcagccgccgcctccgcctcctgccgc
tcctctcccgcggtctcgcagggcgccgcgccgcgccgccactgtgtttttcgagggcgg
ctcggaggactcgcgccccccctcggcttatccgcccccgcccccgccccctccgccggc
gccatcgagaggacccatccccagccacagggggccgcgccgcccgggaggccgctcggc
actggggcccggcaccagagctgttcgcacgggcgggctgggcgcagtctggaggcgagg
agctcgacctcttcgtggatggagctaaatcacgaacttcctagagctactcttaatgcc
ataaaatttgatctcatgaccagtacagatatggaaaaattgagcagcataagcataata
gaagtaagtgatgtcactagtcccaagttaggactaccaaatggttcaccgcagtgtgag
acctgtggatcgcaaagtgaacgtgactgtgatgggcattttggtgtgactaagctggca
gcaactgtacacaacccatactttatcgatgaagttgttcactttctaaatcaaatatgt
cctggctgccttagtccaagggaaagcatgtatttgaagagattggagagcgaacctgtt
cgaacaacatgcaagtattgctctaaggatggctctaaactttaccctagcgtaatcttt
aggacactgtcaagtccaagagtattattatccaagagtaaacttcacagaagcccaagc
gtgatggaaagaatttcgattgttgcagaagcttctgacagagtgtctaataagtcaaag
ggtaaaggtttgcttgaaggcctgccccaggattattgggattttgtaccttctgagaat
cagcaattgcagtctactatgaccaagataatattatcaccctaccaagtctttcacatg
ttgaagaaaagtgaccctgaacttataaaacaatttgtttcaaggcgggagctattgttt
ctatcatgtttaccagtgactcctaattgccatcgtgttgtggagattggatatggtctt
tcagatgggcggctaacttttgatgacagaacaaaggcttacaagaggatggttgatgtc
agtaggagaattgatgactaccggcagcatccacagttcagtgttcttgcaagttcactt
gtgtcaagccgagtttcagaatgcctgaagtcatccaagttatactctagaaagacagag
ggggagacaaccacagatacgtacggaatgaaatggctaaaggatgctgttctcagcaaa
agatcagataatgcttttcgaagtattatggttggggacccaaaaattaggttatgggaa
attggcattcctgaaggtttagcttcaaatttggttgtttctgagcatgttagttcttat
aatttagaaaatatgaatttgaagtgcaacctgcaccttctagctaaggaagaactgttt
attcgccgaaatgggaagctaatgtttattcggaaggcaaaccagctagaagttggcgac
attgcctatagaccattgcaagatggcgatcttattctcatcaacaggcctccttcagtt
catcaacattcactgattgcattatctacaaaaattcttccaattcagtctgttgtatca
atcaatccactatgctgtacgccttttttgggagactttgatggggattgtttgcatgga
tatatcccacaatctatacaatcaagaattgagcttggagagctggtaagcttacaccag
cagctgttgaatatgcaagatggtcgaagtttggtgtcactaacacatgactctcttgct
gctgcacatttgttaacaagtacagatgtttttctgaagaaatctgaattacagcagctt
caaatgctatgcctttcagtatcaaaaacaccagcaccagcagtagttaaatctatggac
tttcaaggttctctgtggacgggtaaacaattgttcagcatgcttcttccttcaggcatg
aatttcagttgtgataggaaattgcacataatagacagtgaagttcttacatgctcttca
gggtcctcttggttacaaaatagcacatctggtctcttttctgtcatgttcaaacagtat
ggtcacaaggcacttgacttcctctcttctgcccaagaagtactatgtgagttcttaacg
atgagaggtttaagcgtctctctttcagatctctatatgttctcagatcattactcaagg
agaaagctgactgagggagtcaaactggctttggatgaagctgaagaagctttccaaatc
aagcaaatattgctagatccaatcaacatacctgttctaaagtgtcatgatgaaactgaa
gatgtaacttacagacaatctgattatattcagaacaatctatcaattgtcagatcttca
atcatggcatttaaagatgtcttcagtgatctcctaaaaatggtgcaacaacaagttagc
aacgataactcgatgatggtgatgattaatgcgggaagcaagggtagcatgttgaaatat
gcgcagcaaactgcatgtgttggtcttcaacttccagcaagcaaatttcccttcagaatt
ccttcccaactctcatgtactagctggaatatgcagaagtcattaaattgtgaagctgag
ggtaccaatggacgtgtgggtggtcaaaacctttatgctgtaatcaggcattccttcatt
gagggtttaaatccattggagtgtcttctgcatgctatatctggcagggcaaacttcttc
agtgagcatgctgatgtgcctgggacactaacgagaaaattaatgtatcacttgagagat
ctacatgttgcttatgatggaactgttagaagttcttacgggcagcacataacacaattc
tcttatgatactgctgatgatatgtattgtaatcgtgaccggatagatgaaatcggtgcc
cctgttggttcttgggccgctagttcggtttcagaagctgcatatggagctttggatcac
ccagttaatggtttagaggactcccctctaatgaatctacaagaagtatttaagtgtcac
aaggctacaaattctggtgatcatgctggtttacttttcctgtcaaagcatttgaagaag
tatagatacggtctggaatatgcatccctagaagttaaaaaccatcttgagcgagtaaac
ttctctgatttggttgaaaccgtcatgattatatatgatggatgtgaaacaacaagaaaa
ggaggaccttggaccacccatttccatataagcaaggaaatgatgaagaagaaaaggtta
ggattgggatttgttgtagaagagcttacagaagagtatgacaccactagaaaccagcta
aacaatgcaatcccatcagttcgtatttcaaagagaaaatgttcagtaggtgatgagtgt
gttcaaaattcaacttgctgtatcacagtggtagcacaagctgaatccaactccatggcc
cagttggacactatcaagaaaagagtgattccaatcctgctggatacactactgaaaggt
tttttggaatttaaggatgttgagatccagtgtcagcatgatggtgaacttcttgtgaaa
gttggcatgtctgagcattgcaaggctgggaggttctgggctactctacaaaatgcttgc
attccagtaatggagttgattgactgggagcagagtcaaccaaagaatgtatatgatatt
ttctgttcatatggcatagactcggcatggaaatgttttgttgaatatttaaaatcagta
atggctgatattggaaggaatgttcgtcgggagcacttactagttgttgcagatagcttg
tctgtgactgggcagttccatgcattaagcagtcaaggtttaaagcagcagcacactcgg
ttatcaatctcatctccattttctgaagcatgtttttctaggcctgcacaaagttttata
aatgctgcaaagcaatgctcagtggacaatttgtgtggaagtctagatgcaattgcttgg
ggcaaagagcctttcaatgggacgtcagggccttttgaaattatgcatgtgggaaagcca
catgaaccagaagaaaatgagagcatctatggtttcctatgtgaccctgcagttcggaat
tttgaaaagaatcatatggatacctgcagacatagtactgaaaattctttgagatgtagg
ttagcatgcaagtctaatggcaatgcaaccgtcaatggtggcgacataactatcgaccaa
ggctttcttcatgctaaagttggtgtgtggaataacattattgatatgcgcacttcatta
cagaacatgctaagagagtacccattaaatggatatgtgatggagccagataaatcacta
ttagtcgaagccctgaagtttcatcccaaaggggctgaaaagattggtgttggagtaaaa
gaaattaagatcggactgaatcctagtcacccagggacaagatgcttcattttactgagg
aatgatgatacaactgaagacttttcttacaacaagtgtgttcagggtgctgcaaattct
atttcacctcaactcggaagttattttgagaagaaactatatcgtagaggataa

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