Panicum virgatum (switchgrass): 120652776
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Entry
120652776 CDS
T07260
Name
(RefSeq) protein SIEL-like isoform X1
KO
K13141
integrator complex subunit 4
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120652776
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
120652776
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Gene cluster
GFIT
Motif
Pfam:
HEAT
HEAT_2
PDS5
HEAT_EZ
Cnd3
Cnd1
Motif
Other DBs
NCBI-GeneID:
120652776
NCBI-ProteinID:
XP_039786640
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Position
9K:58664141..58669145
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AA seq
824 aa
AA seq
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MGDPHLLSSAHSASATTYSARKHPSPIDEPFSDPSPSVTKRPRVAAEPSAPSDAAPHPEA
EVRSLVMMAGGIYPLARAEGLRGLAAVLEKVDAGCSVGARIADCCYECAAELMRDDDEGV
RLAVVRLVGLCAQKFSARMDIDAKGHGDLMDLIFLQLSSMARDMCTKVRIEAFSALGKMQ
RVSEGVLLQSLSKKVIKTDTMSIINGQKLLPKIKIPCAAGIFAHGIEDEFYQVRTAACTS
LGALAKFSSQYAEKALDLLMDMMNDDTEAVRLQTLQALFHMATYGYLSMEEKHMHMFLGL
LVDANALIRNAAHKILGLVNLPKLQMFKSALDGLITSLEKNPEEQDIYGILFSIGKNHGS
FSANIAKHLAKEITMASHGELILDKPRIKALLIVSISASFSDDKHKKLDIPSIIFSHTIS
LLEKVSSALGDEVNEDSILSYLCHKGGMPFWGNRSISTEFGVSESCKVETVEIGAKVENT
AKTAKCLDRVLVMQSMESILQTVEVAWTMKMSSDIFEAQTILRTCKEELKVLAENSAGSI
GAFSSFLCEYLHAIHLIIEIWQLIKLDNSYTFGLTSHDILLEKFNISIRRMEYCYAGLNR
ELEVQVLELSLLANLFGLSKIGACSKVVLGKLLWIISRLEGLCADGSCELSDFSREIKKA
LDANPNGDTLIGNIHTLFELFHVKPTTDFGMVKEISAVLQVCDNSSENPLSYICGLPVGV
SFNISLWNISSHHRLWFRMSIGESVQHAFLEFSSFEGNEEVKNGSMVVPLDATPMAHSFV
LRVCLLMECSYGISTNQGGHGGPSDCVVQLSDELDVYFFSTGQR
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacccgcacctcctctcctccgcccactctgcctccgccaccacctactccgct
cgaaaacaccctagccccatcgacgagcccttctccgatcccagcccgtccgtcaccaag
cggcctagggttgcggcggagccgtccgcgcccagtgacgcggctccgcaccccgaggcg
gaggtccggtcgctcgtcatgatggccggaggaatctacccgctggcgcgggccgagggg
ctccgcggcctcgccgcggtcctggagaaggtggatgccggctgctctgtcggcgcaagg
attgcggactgctgctacgaatgcgcggcggagctcatgagggatgacgacgagggcgtc
aggctggccgtcgttcgattggtaggcctatgtgctcagaagttttctgcgagaatggat
atcgatgccaagggccatggtgacctcatggacttgattttcctacagcttagctccatg
gctagggacatgtgcacaaaagtgagaattgaagcattcagtgccctcggtaaaatgcaa
cgagtttctgagggtgtattacttcagtcgttgtctaagaaggttataaaaactgacact
atgagtatcatcaacgggcaaaagttacttcctaagataaaaattccctgtgctgctggc
atttttgcccatggaattgaagatgagttttaccaggtgcgaacagctgcttgtacatca
ttgggagcactggcaaagttttctagtcagtatgcggagaaggccttggacttgttgatg
gacatgatgaatgatgatacagaagcagttaggctgcagactttgcaagcactatttcat
atggcaacatatggatatttgagtatggaagagaagcacatgcatatgtttcttggcttg
ctggttgatgccaatgccttaattcgaaatgcagcacacaagatccttgggttagtcaac
ctgcccaaacttcaaatgttcaaatctgcacttgatggcctcattacaagtttggagaaa
aatcctgaggaacaagatatatatggtattctgttttctattggtaagaatcatgggagc
ttttcagctaacatagctaaacatttggccaaagagatcactatggcatctcacggagag
cttatcttggacaaacctaggatcaaagcattgctaatagtgtcaatctcagcatctttt
tctgatgataagcacaagaagttggacataccttcaattatcttctcacatacaatttcc
ctattggagaaggtctcatctgcactcggagatgaggttaatgaggattcgattttatcc
tacttgtgtcataaaggtggaatgccattttggggaaacagatcaatatctacagagttt
ggagtatctgaaagctgcaaagttgaaactgtggaaattggcgccaaagtagaaaatact
gcaaagacagctaagtgtctagacagagttctggtaatgcaatccatggaatccatacta
caaactgttgaagtagcctggactatgaaaatgtcaagcgatatttttgaagcccaaact
attttgagaacatgcaaagaagagctaaaagtattggctgaaaattctgctggatcaatt
ggtgcgttctcaagctttctatgcgagtatcttcatgcaatacacttgatcattgaaata
tggcagttgattaaattggataattcttatacttttggcctaacatcacatgatatttta
ctggagaagtttaatatatccataagaaggatggaatactgttatgctggattaaataga
gaattggaggttcaagtgttggagctttctttgttagctaatttatttggattgtcaaag
attggagcttgttcaaaggtagttctgggtaagttgctttggattattagtcgcctagaa
ggtctgtgtgctgatgggtcctgtgagctgtctgacttcagcagagaaattaagaaagcc
ttggatgccaaccctaacggcgatactctgatcggcaacattcacactttgtttgaactc
ttccatgtaaaaccaacaacagattttggaatggttaaagagataagtgcagtgttgcaa
gtttgtgataacagttctgagaatccactgtcatacatttgtggattaccagtgggcgtc
agttttaacatatctctgtggaacatatctagccatcatagattatggttccgcatgagc
attggtgagtccgtgcaacatgccttcttagagttttcctcatttgaaggtaatgaggag
gtgaagaatggctctatggttgttcctcttgatgccactccaatggcacattcatttgtg
ctgagggtatgtctgctaatggagtgttcatatggtatcagcaccaaccagggaggacat
ggaggaccgagtgattgtgttgtccaactctctgatgaactggatgtttattttttcagt
actgggcaaaggtga
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