Panicum virgatum (switchgrass): 120653419
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Entry
120653419 CDS
T07260
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120653419
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120653419
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120653419
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
120653419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
HATPase_c
Motif
Other DBs
NCBI-GeneID:
120653419
NCBI-ProteinID:
XP_039787102
LinkDB
All DBs
Position
1N:complement(20832126..20863444)
Genome browser
AA seq
1548 aa
AA seq
DB search
MAEASRGAKGKALVQYSNGFEEEYASRMYQFQVLLPSGVSISLTLNNPGEEMLVRDLLHS
VKRELNSAPVGGGKVREIHWDGNIFLTDLLDKKITDKIKFSNFDTKSTNILRLHDEKGGF
VSTFENMWDLTPQTDLVQELPAEYSIESALVDLIDNALQAVWSNGNGERKLIRITANKDK
IVIFDTGRGMDGSDANSISKWGTMGSSNHRAFRQKGIGGKAPYLLPFFGMFGYGGTIASM
HLGRIAIVSSKTKESRKVFILHLSREALLEKPVSKNSKYTWKTAGGVRDPSKEEMLLSPH
QSFTQVEICRLKKHLEVDRLLGFLKDIYFPYIQYDEDNESTNTRNPVEFEVNGVNLAEVQ
EGEVTVTNMHSSNGPDFILHLKFTEITAASCQSHARLKCVYFPITKGKESIDAILEKLRI
DGYEMKENFDKFSRVSIRRLGRLLPDARWGPLPFMEAKYRKGRKAEFFRRCCKRVKCFVE
TDAGFSPTLSKTDLAQHNHFTKALRNWGSNFLNNTSAEVDVEAHDKDGKLLSYNQLEKQY
YDWIKEMHDKYDVEMDGGDDEPTLIINPKCKERLAISNDVEVIRLHRSISRKGKTWRRGD
HLKIHKGATGRMKTAFYSLKTSLCTTLEYIVVEGLQGDICGEARLICRPIDCSDEQGCWL
DETECTSPNISIQESVSFPVSIIEDRLCEIMDDNSWNQVLKKRKEKAPAWIELIRNSEVD
TLGLGGDLPYEGDVMAGYQPPHEIVAVLRPGNYTPSSTGHLEQKYIVKDELEMVMEVKHL
ARSKDCPAKLVDRKVKKTSLHNDIHGLYVFPLREASWIFKKSGVYQFNFSVSCRDTSIIQ
KQTTITVCPDLNSRRCLFSIVGSSTDSAPVNIRLGCPVRCLVVKSVDQYGNEIPFLDTSG
ITITIFDGDDVLAHVDDVEVELSSDSLAMNVKDFVFKTSKLDILRPKYGAKLKLSSLDNK
LSGIWPCKVKPGLPSTIIMDMSVFLEENLTPGRVIDNFLLEVFDQFSNQVEEGTELNIHV
DGLCFLDKKSSVQKIPESCLAGSILDIIFEVSDSNGLIDESIDGPLHTLNITSNELPLAE
GARYAIKHGRCVVSHVQLPHEQGNVTIVACHTHYPDLQITIQFQVQPFDLALTCFEDGPE
PILSDPILSLDSSNPLMPFQVAPAQPSHLVTYVKDDIKKAKSKVGDTFSEIESSKNRLVT
LYSRKESLEEEIDTLKGEIGSMVGYFIDAKELIRHKIREKLGTAAFVLLSSRRECFIDDF
VGIVALLGTVPDIKIGRMLAVYLGKDDMLSVVCKTMDAANCIEKYNTDGDVDVGFGIHHE
AATLGVPIKSRFSTICLDDIESPLFCRPYKCLMQNSPQKELNLTWPFPFVKRPKGFKGFA
VNMINLSDENLNITTKGGHGLRETLFYSLFGELQVYETRDDMFRAKDYLNGGAISLDGGV
IKGKGKLLLGYSDPKITFPVASGSMKMPDELKGHQDVITKTGNLDEKVKLLEAIKTEISK
QEMVAKELLEKFNKRKRKFDEISEKIIQAYGREHVLWCTPVKAEMHDL
NT seq
4647 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggcaagcagaggagctaagggaaaggctttagtacaatattcaaatgggttc
gaggaagaatatgcttcaagaatgtaccagtttcaggtactgttgccaagtggtgtgagc
atcagcctcacgctgaacaaccctggcgaagagatgttggttcgtgatctattgcatagt
gtcaagagggagttgaacagtgcccctgtgggaggtggaaaggtgcgggagatacactgg
gatggcaatatttttctaacggacctccttgacaagaagattacagacaaaatcaagttt
agcaactttgataccaagagtacaaacatattaagactccacgatgaaaaaggaggattt
gtcagtacatttgagaatatgtgggaccttacccctcagactgatctggttcaagagctt
ccggcagaatatagcattgagagtgctcttgttgaccttattgataatgcactgcaagct
gtgtggtccaatggtaatggagaaaggaagttgatcaggataacagctaacaaagataag
attgtgatttttgatactggtaggggaatggacggttccgatgcgaattctatctctaaa
tggggtacaatgggttcttctaaccatagagcatttcggcagaaaggtattggtgggaaa
gcaccatatctattgcccttctttgggatgtttggttatggtggaactattgcttcaatg
catcttggaagaattgctattgtttcctctaaaactaaggaatctagaaaagtgtttatc
ttacacctatcaagggaggccttgctggaaaaaccagtatctaagaattccaaatacact
tggaagactgctggaggagttagggatccatctaaagaggagatgctgttgtcaccacac
cagagttttacccaggtggagatctgtcggttgaaaaaacatctagaagtagacagactt
cttggttttttgaaggacatctatttcccatatatccagtatgatgaggataatgaatca
acgaatacaaggaacccagttgaattcgaggtgaatggtgtaaatttagcagaggtacaa
gaaggtgaagtcacagtaactaatatgcactcttcaaatggtcctgattttattttgcac
ctaaagtttacagaaataacagcagcttcatgtcaatcccatgcgcggttgaagtgtgtc
tactttccaattacaaagggaaaagaatctatagacgctatcttggaaaagttaaggatc
gatggctatgaaatgaaagagaactttgacaagttctctcgtgtatcaattcgtcgactt
gggcgtttacttcccgatgctagatggggtcctcttccattcatggaagctaaatacaga
aaaggccgcaaggctgaattctttagaagatgctgcaagagggtaaaatgctttgtagaa
acagatgcagggttctctccaacactttcaaagactgatttagcacaacataatcatttt
accaaggcacttcgtaattggggcagcaattttttgaacaatacctcagctgaggttgat
gttgaagctcatgacaaggacggaaaattactaagttataatcagctggagaaacaatac
tatgattggatcaaggaaatgcatgataagtatgatgtggaaatggatggtggggatgat
gaacccacccttattatcaatccaaagtgcaaggaacgacttgcaatatccaatgatgtt
gaagtcattagacttcatagatcaattagcagaaaagggaaaacttggaggagaggagat
catctgaaaattcataagggagcaactggacgtatgaaaactgcattctattcgttgaaa
acttctttgtgtaccactttggagtacattgttgttgaaggtcttcaaggagatatttgc
ggtgaagcccgccttatatgcaggcctatcgattgctctgacgagcaaggatgctggctc
gatgaaaccgagtgcacgagtccaaacatatctatacaagaatcagtctcgtttcctgtc
agcataatagaagatagactgtgcgaaattatggatgataattcttggaatcaagtgctg
aaaaagagaaaggagaaggctcctgcatggattgaactcatcaggaattctgaagtcgac
actcttggactaggaggggatctaccatatgaaggtgatgtaatggctggttatcaacct
ccacacgaaattgtagctgttttacggccaggaaattatacgcctagctccactggtcat
cttgagcagaagtatattgtgaaggatgagctggagatggtaatggaggttaaacatttg
gccagaagtaaagactgtcctgcaaaacttgttgatagaaaggtgaagaaaacctcattg
cataatgacatacatggactgtacgtatttccattgagagaagcttcatggatatttaaa
aaatctggagtttaccagtttaatttctctgtgagttgcagagatacaagtatcattcag
aaacagacaactataacagtctgtcccgacttgaactctaggcgttgtcttttcagtatc
gttggctcttctactgatagtgctcctgtgaatataaggcttggatgtccagttagatgt
cttgttgttaaaagtgttgatcaatatggaaatgaaattcctttccttgatacatctggc
attactataactatatttgatggtgatgatgtccttgcgcatgttgatgacgttgaagtg
gaactctcatcagattcattagcgatgaacgtcaaagattttgtgtttaaaaccagcaag
ttagacatactacggccaaagtatggggcgaagttgaagctatcttcattggataataag
ttgtctggtatatggccatgtaaagttaaaccaggccttccatcaaccattattatggac
atgtccgtcttcttggaagagaatttaactcctggaagagtgattgataatttccttctt
gaggtgtttgatcaatttagcaatcaggttgaagaaggaaccgaacttaatatccatgtt
gatggactctgctttctagataaaaaaagctccgttcagaagattcctgaaagttgtctg
gctggatccattctggacatcatatttgaagtttctgatagtaacggtctgattgatgaa
tccatagatggaccccttcatacactcaacatcacatcgaatgaattaccactagcggaa
ggagcacgatatgccattaaacatggaaggtgtgtagtttctcatgtgcagcttcctcat
gaacaaggaaatgtcactattgtggcatgtcacacacattatcctgatctgcaaataacg
attcagtttcaagttcaaccttttgatttggcgttgacctgctttgaggatggacctgaa
cctatattgagcgatccaattttatcccttgacagttcaaatcctttaatgccctttcaa
gttgctcctgctcaacctagtcatcttgtcacatatgtaaaagatgatattaagaaagct
aaaagtaaagttggagataccttttcagagatagagtcttcgaaaaatagacttgtaact
ctttattctcgcaaggaatcactggaggaggaaattgacaccctaaaaggtgagatcggg
tctatggttggttatttcattgatgcaaaggagttaatacgtcataaaattagagaaaaa
cttggtactgctgcttttgttctattgtctagtcgtcgtgaatgtttcatcgatgatttt
gttggtattgttgccctacttggaactgttccagacatcaaaattggcaggatgcttgct
gtatatcttggcaaagatgacatgctttccgtagtttgcaagacaatggatgctgctaat
tgcatcgagaaatacaacacagatggagatgtagatgttggttttggcattcatcatgaa
gcagctactctaggagtacccataaagagtagattttctaccatctgcctagatgatata
gagtcacctcttttctgcaggccctataaatgtcttatgcagaacagtccacaaaaggaa
ttaaacctgacgtggccgtttccatttgttaaaagacctaagggattcaaaggatttgct
gtcaatatgataaatctttctgacgagaacttgaacataacaactaaaggtggacatgga
ctccgtgaaactttattttatagtctctttggagagcttcaagtttatgaaacccgagat
gatatgttccgagccaaggactatttgaacggtggagcaatatcattggatggtggcgtt
attaaaggaaaaggaaaacttcttcttggttacagtgatccaaagataacatttcctgtt
gcctccggctcgatgaagatgccagatgagttaaaaggtcatcaggatgtcatcacgaag
acaggaaacctggatgaaaaagtgaagcttttggaagcaatcaaaaccgaaataagcaaa
caagaaatggttgctaaggaactgttggagaagttcaacaagaggaagcgcaagtttgac
gagatatcagagaaaataatccaggcttatggcagggagcatgttctttggtgcaccccg
gtgaaagcggaaatgcatgatctgtaa
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integrated database retrieval system
