KEGG   Panicum virgatum (switchgrass): 120656974
Entry
120656974         CDS       T07260                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RBX1-like isoform X1
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03420  Nucleotide excision repair
pvir04120  Ubiquitin mediated proteolysis
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120656974
   04120 Ubiquitin mediated proteolysis
    120656974
  09124 Replication and repair
   03420 Nucleotide excision repair
    120656974
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120656974
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120656974
Enzymes [BR:pvir01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     120656974
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   120656974
  Multi subunit type E3
   SCF complex
    Ring finger protein
     120656974
   Cul2 complex
     120656974
   Cul3 complex
     120656974
   Cul4 complex
     120656974
   Cul7 complex
     120656974
   Cul8 complex
     120656974
   Cul9 complex
     120656974
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      120656974
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      120656974
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4 zf-C3HC4_2 zf-RING_11 DUF8003
Other DBs
NCBI-GeneID: 120656974
NCBI-ProteinID: XP_039791149
LinkDB
Position
1N:57797877..57799994
AA seq 116 aa
MDKGGVAVAPAPAGSSAAAGKKAKRFDIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIEC
QANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLVDIADNSEWEFQKYGH
NT seq 351 nt   +upstreamnt  +downstreamnt
atggacaagggcggcgtcgcggtggccccggccccggcgggctcctccgccgccgcgggg
aagaaggccaagcgcttcgacatcaagaagtggaacgccgtctccctctgggcctgggac
atcgtggtggataactgcgccatctgccgcaaccacatcatggacctctgtatcgagtgt
caggcgaaccaggcgagcgccaccagcgaggagtgcaccgtcgcttggggagtttgcaac
catgcattccatttccactgtatcagtcgttggctcaagactcgtcaagtgtgccctcta
gttgatattgcagacaacagcgagtgggagttccagaagtatggtcactag

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