Panicum virgatum (switchgrass): 120657368
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Entry
120657368 CDS
T07260
Name
(RefSeq) isoleucine--tRNA ligase, chloroplastic/mitochondrial-like
KO
K01870
isoleucyl-tRNA synthetase [EC:
6.1.1.5
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120657368
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120657368
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120657368
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.5 isoleucine---tRNA ligase
120657368
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class I (U)
120657368
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
120657368
Prokaryotic type
Other AARSs
120657368
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
tRNA-synt_1g
zf-FPG_IleRS
tRNA-synt_1_2
tRNA-synt_1e
Motif
Other DBs
NCBI-GeneID:
120657368
NCBI-ProteinID:
XP_039791604
LinkDB
All DBs
Position
1N:63506260..63516197
Genome browser
AA seq
1059 aa
AA seq
DB search
MDAASCCRVFSTQRCRFPLRRLAAPPWSQPFGTESSGGLSAASISKRRSRGPVMAAKKAQ
QGAKQEDGKYKHTVDLPKTTFGLRANSVVREPELQKLWEENQVLKRVSERNTGATFVLHD
GPPYANGDLHMGHALNKILKDIINRYKLLQNHKVSFVPGWDCHGLPIELKVLKSMDKETL
GALTPIKLRQKAAKFAKATVEAQMKSFKRYGVWADWGNPYLTLSPEYEAAQLEVFGQMVM
KGYIYRGRKPVHWSPSSRTALAEAELEYSENHVSRSIYAAFKITNPSKSGMLDEFLPNVS
LVIWTTTPWTIPANAAVAVNPELAYAVAEVQSVFLSESTSGGKQKRVGSVLSSEKGKLFV
IVASDLVTTLESKWGVKLVVQKSFPGSALEHCRYVHPVNGNECSVVLGGDYITTESGTGL
VHTAPGHGQEDYITGLKYGLPIISPVDDEGNFTAEAGQFSGLSVLGAGNAAVVKYLDEQY
SLILEEPYKHKYPYDWRSKEPTIFRATEQWFASVDGFRNAAMDAITQVAWVPSQAENRIV
AMTSSRSDWCISRQRTWGVPIPVFYHVDSQEPLITEETIEHIKAIVSKKGSDAWWYMTTE
ELLPDKYRDKASEYHKGTDTMDVWFDSGSSWAAVLAKRDGLKFPADIYLEGSDQHRGWFQ
SSLLTSIATTGKAPYSTVITHGFVLDEKGFKMSKSIGNVVDPEKLIVGGKDQREEPTYGA
DVLRLWVSSVDYTGDVLIGPQILRQMSDMYRKLRGTMRFLLSNLHDWKPDNSVPYSDLPK
IDKYALFQLETVVTSMKDSYENYQFFKVYQMLQRFAIVGLSNFYLDVAKDRLYVGGRVSF
TRKSCQTVLTAHLLYLVRAIAPIMPHLAEDVWQNLPFQYTLQDGSPAKFVFDLKWPEKNE
EWLSVPKDDVDFLGIILELRSEVNKILENARTGKLIGSSLDAKVYIHAESSDTALKLKEL
SSASNDADSLHRLFITSQVEVLDTLNEETTSSVSYTGKFSDARTGDIWIGVTRADGAKCE
RCWNYTRDVGSFHDHPTLCARCYGVIDLQPQPAAAAAVS
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgcctcatgctgccgcgtcttctccacgcagcggtgccggttcccgctgcgc
aggctggcagcgccgccgtggtcgcagccgtttggcaccgagtcgagcggcggcctctcc
gccgcgtcgatctcgaagcggaggtccagggggcccgtcatggcggcgaagaaggctcag
cagggtgcaaagcaagaggatggtaagtacaagcacacagtggatctcccgaaaacaaca
tttgggttgagagcgaattctgttgtaagggaaccagaactccagaaattatgggaggag
aatcaagttctgaaaagggtatctgaaaggaacactggggctacatttgttcttcatgat
ggccctccttatgctaatggcgaccttcatatgggccatgcgctcaataaaatcctcaaa
gatattataaatcgttacaagctgcttcagaatcataaagtgtcttttgttcctgggtgg
gattgccatggccttccaatagaactaaaagttttgaagtcaatggataaggaaactttg
ggtgctcttacacccataaaattaaggcaaaaagctgcaaaatttgctaaagcaacagtc
gaagcacaaatgaaatctttcaagcggtatggtgtatgggctgattggggcaatccttac
ctaactctgtcaccagaatatgaagctgctcagttggaagtatttggtcaaatggttatg
aaaggatatatctacagaggacgaaagcccgtccattggagtccatcatcgcgtacagct
ttggcagaagctgaactggagtattccgagaatcatgtttccagaagcatatatgctgca
ttcaagattacaaatccatctaaatctgggatgctggacgaatttcttccaaatgtatct
ttggtcatatggaccaccactccatggactattccggctaatgctgctgttgctgtgaac
cctgagcttgcttacgcagtagctgaggtacaatctgtattcttaagtgaatcaacatct
ggtggcaaacaaaaaagagttgggagtgtgttgagctctgaaaaaggaaaattgtttgtt
attgtggcttctgatcttgtcacaactcttgagtcaaaatggggtgtgaagcttgtagta
cagaaatcatttcctggatctgccttggagcactgcaggtatgtccatcctgtgaatggc
aatgaatgttctgtagttcttggaggagattacattacaactgaatctggaactggcctt
gttcatactgcccctggccatggccaggaagactacataacaggtctgaagtatgggctt
cctattatttctcctgtggatgatgaaggaaacttcactgctgaagctggacagtttagt
ggtttgtctgtcctgggagctggcaatgctgcagttgtgaagtatctggatgaacaatat
tcactcattttagaagagccttacaaacacaagtacccctatgattggagatctaaagaa
ccaactatattccgagcaaccgaacagtggtttgcatctgtggatggttttcgtaatgct
gcaatggatgcaatcacacaagtagcttgggttccttctcaggctgaaaacaggattgtt
gcgatgacctccagccgttctgattggtgtatttcacgacagagaacttggggtgttcct
attccagttttttaccatgtggactcacaagaacctcttataactgaagaaactattgaa
catatcaaggctattgtgtctaagaaaggtagcgatgcatggtggtatatgactactgag
gaacttcttccagataaatatcgggacaaagcatctgaatatcacaagggaactgataca
atggatgtttggtttgactctggctcttcgtgggcagctgttttagcaaaaagggatggt
cttaagtttcctgcagatatttatcttgaaggttcagatcaacatcgtggatggttccag
agctcattgttgactagcattgctactacagggaaggctccatactccactgttattaca
catggatttgtactggatgaaaagggttttaaaatgagcaaatctattggtaatgtggtg
gatccagagaaattgatagttggtggcaaagaccaaagggaagaacctacctatggcgca
gatgttctccgtctatgggtttctagtgttgattacactggcgatgtgttgattggtcca
caaatcttgcgccagatgtctgacatgtatagaaaactacgaggcacgatgcggtttctg
ttgtcaaatctccatgattggaaaccggataattcagttccctacagtgatctgccaaaa
attgacaagtatgcacttttccaactggaaacagttgtgacttctatgaaggatagttat
gaaaattaccaattctttaaagtatatcagatgcttcaaagatttgctattgttggtttg
tccaatttttatttggatgttgccaaggatcggctttatgttggaggccgagttagcttc
acaaggaaaagctgtcagactgtcctcacagcacatctgctctaccttgttagggccatt
gccccgattatgcctcacttagctgaggatgtctggcagaacctaccttttcaatacacc
ttacaggatggatcccctgcaaagtttgtttttgacctaaaatggccagaaaagaatgaa
gaatggctctcagtccccaaggatgatgttgatttcctgggcattatccttgagttgagg
tcagaggtcaacaaaattttggagaacgctcgcactggaaagttgataggctctagctta
gatgcaaaggtgtatatccatgctgaaagttcagatacagcattaaagctaaaggagcta
tcttctgcatctaatgacgcagactctctgcatcgcctgttcatcacatctcaggtggag
gttctcgataccctaaatgaagaaactacatcatctgtatcttacacaggaaagttcagt
gacgcacgcactggagacatatggatcggtgtgactcgtgcagatggtgcaaaatgtgag
aggtgctggaactacacccgggacgttggatctttccatgaccatcctactttatgcgca
cggtgttatggtgtcattgatttgcagccacaacctgctgctgctgctgctgtcagttaa
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