Panicum virgatum (switchgrass): 120657562
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Entry
120657562 CDS
T07260
Name
(RefSeq) ABC transporter I family member 19-like isoform X1
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120657562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120657562
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120657562
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA
AAA_28
SMC_N
NACHT
AAA_15
AAA_23
AAA_18
AAA_25
AAA_5
SRP54
AAA_30
AAA_22
Zeta_toxin
PduV-EutP
AAA_24
AAA_33
AAA_16
Arf
AAA_14
Rad17
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
120657562
NCBI-ProteinID:
XP_039791838
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Position
1N:complement(65366159..65369709)
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AA seq
295 aa
AA seq
DB search
MTGEGNGDEGWRRSGIEVSALQFGYDGQPPLFARFNLRVAPGSRCLLVGANGSGKTTLLK
ILAGKHMVGGRDVVRVLNGSAFHDTQLVCNGDLSYLGGSWSRTIGSAGDVPLQGDFSAEH
MIFGVDGVDPVRREKLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEITVD
LDVVTRMDLLDFFKEECEQREATIVYATHIFDGLETWATDIAYIQEGELRKTAKYSDIEE
LKNAKNLLTVVESWLRSETKLPKKDPPPRSETQPRRSSPFDNSPFRSSRHMAYYR
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcgaaggaaacggagacgaagggtggaggcggagcggcatcgaggtcagcgcc
ctgcagttcggctacgacgggcagccgccgctcttcgcgcgattcaacctccgcgtcgcc
cctggctcccgctgcctcctcgtcggcgccaatggatcaggcaagactacactcttgaag
attcttgccggaaagcatatggttggaggaagggatgtggtccgtgttctcaacggttca
gcttttcatgacacacagttggtgtgcaatggtgacctttcatacttggggggctcgtgg
agccggactattggttcagctggtgatgttccgctgcaaggtgacttctctgccgagcac
atgatttttggagttgacggggttgatcctgttaggcgagagaagctgattgatctgcta
gacattgatctgcaatggcgcatgcataaagtttcagatggacagcgccgcagggtgcaa
atctgcatgggtcttcttcatccatataaggtgcttttacttgatgaaatcaccgttgat
ctggatgttgtgaccagaatggatctccttgacttctttaaggaagagtgcgaacagaga
gaagccaccatcgtgtacgccacccatatattcgatggcctagagacatgggctaccgac
attgcatatatccaggaaggcgaactgagaaaaacagcaaaatactcggacatcgaagag
ctgaagaatgctaaaaacttgctgaccgtggttgagtcatggctccgatcagagaccaaa
ctccccaagaaggatcctccaccacgttcagagacccagcccaggcgctcctcgccgttt
gataattctcctttccgctcatctcgccacatggcatactaccgttga
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