Panicum virgatum (switchgrass): 120659418
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Entry
120659418 CDS
T07260
Name
(RefSeq) small nuclear ribonucleoprotein-associated proteins B and B'-like
KO
K11086
small nuclear ribonucleoprotein B and B'
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120659418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120659418
03041 Spliceosome [BR:
pvir03041
]
120659418
03032 DNA replication proteins [BR:
pvir03032
]
120659418
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
120659418
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
Sm proteins
120659418
U2 snRNP components
120659418
Complex B
U1 snRNP components
120659418
U4/U6.U5 tri-snRNP components
120659418
Complex C
U2 snRNP components
120659418
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
120659418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
120659418
NCBI-ProteinID:
XP_039793493
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All DBs
Position
2N:4982585..4985975
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AA seq
265 aa
AA seq
DB search
MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRRLPPSKSSKTT
GDREERRTLGLLLLRGEEVVSMTVEGPPPPDESRAKAAAAGGALAGPGVGRAAGRGVPSG
PLLQAAPGLAGPVRGVGGPAPGMMQPQISRPPMPNLSAPPVAYPQVVRPPQGMPPPPMRP
GMPPQMPMPFQRPPGAPPAPFPGAPPQQFMRGPPPMGPPQIRPGMPGPPHPGMRPGMPPP
PFGQPRPGMPPPPPGPQQPGQNPPQ
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacccgaagggctccaagatgctccagttcgtcaactaccgcatgcgggtgacg
atccaggacggccgccagctcgttggcaagttcatggcgttcgaccgccacatgaacctc
gtcctcggcgactgcgaggagttccgccgcctcccgccctccaagtcctccaagaccacc
ggcgaccgcgaggagcgccgcacgctcgggcttctcctcctccgcggcgaggaggtcgtc
tccatgaccgtcgagggcccgccgccgcctgacgagtcgcgcgccaaggccgccgcggct
gggggtgccctcgccggcccgggtgtcggccgcgccgctggacgcggtgttccctctggc
ccgctcctccaggccgctccgggcctcgccggccctgttcggggcgtgggtggacccgcc
cccggcatgatgcagccccagatctcgcggccgccgatgcccaacctgtcggcgccgccg
gtggcgtacccgcaggttgtgcgaccgccgcaggggatgcctcctccgccaatgcggcct
ggaatgccgccgcagatgccgatgccgttccaacgtccgcctggggcgccgcctgctccg
ttccctggggcacccccacaacagttcatgaggggtcccccgccgatggggccgcctcag
atcaggcccgggatgccgggtcctccacaccctggaatgaggcctgggatgcctccgccg
ccgttcggacagccgaggccagggatgccgcccccgccacctggcccgcagcagcctgga
cagaacccgccgcagtag
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