Panicum virgatum (switchgrass): 120659988
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Entry
120659988 CDS
T07260
Name
(RefSeq) nuclear pore complex protein GP210-like
KO
K14314
nuclear pore complex protein Nup210
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120659988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120659988
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120659988
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_7th
Ig_NUP210_1st
Ig_NUP210_5th
Big_2
Ig_NUP210_2nd
Ig_NUP210_16th
Ig_NUP210_3rd
Ig_NUP210_8th
Ig_TMEM132_5th
Motif
Other DBs
NCBI-GeneID:
120659988
NCBI-ProteinID:
XP_039794235
LinkDB
All DBs
Position
2N:20314592..20342519
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AA seq
1966 aa
AA seq
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MGSPPAAAAAVAAAVAVVVVAALLSASAAANPAGGPHMADLSVLLPPRMTKPVEYRLIGG
DGCFSWSWDHHDLISVKPEYTDSSRCSTSARLASISPYNGRRETSVYATDIISGITIHCK
VFVDKISRIRIFHHAVKIDLDEIATLRVHAFDDEENVFSSLVGLQFLWQLSPRLLDNSSH
HLVHIPLKETHLSDCGGFCGDMNVRFELEDKNLGSDFFVVKGIEIGQEVVKAQLFEPQFE
HVIDTITLTVAEAMSLKPPSPVLVTVGVLVKFKLKVFQQKVAQAVKLPSPYHRWRATNSS
VAQVDSSLGISRALSLGFTKVVVEDTRVEGHEQVSSLHVVIPRTLFLYLVPIMNDSAHLH
GITNIPSSKVWYVYPGRKYMVLAKAFAEGFDAREIYITEENELKLESSTMEFWNLSRVPD
SSIGSYEVQTSRLLNPVSQGKGHLVASLTYRTELSGPAKALKIVQEVNVCSKVKAFWDER
LENSNVIHLPWVPGVYQEIELKAIGGCGKTLDDYKLFSSDEDVASVSDSRIVRAKKPGQA
VIRVVSAFDFLNFDEIFVEVSIPSVLSILPVFPVEVPVGTRLHASAALKTSNGHSFSRCD
YFNAFIRWSVLSDNESFHILNTADASSVEDIKRSAVSWGQNGNPCAWIYLSASAAGRSTV
VATFTFDPDSNIETLGPISLKATSKISAYYPLVVLQGGNGNQFGGYWFDLSGIHSRIEKM
DNNIPKELYLVPRSAMDVLLFGGPERWDQVVDFVETVDVISESNNHISSSTAVQKLSSGI
YRVSCPSNVNYKLLFSRGNMIGKDHPVPAIAKSEFSVVCDFPSEITLIANENENQLDILE
AASKADRGPDRLQASPVVISNGRNIRLAAVGIHGNGRFFANSSSLCLKWEATGCEGLAYF
DETKSSEVLDESAWERFLVLQNSTGVCTVRATVIGFSTKFAGQTHEERTFHTLTDAIQLQ
LVSSLRVTPEYVLLVFHPDAQENLIVSGGTCSLDASTNDTHVVQIVKHPGKYLCSQLILG
ANGLGKAIVTIQDVGLSPRATTHSLARVANVDWIKIIAEEHISLMEGSTKDFQILAGTQD
GQTFGDSQFKYMGIELHIGDEILELISPMDSMDGPKFSIKAAKTGITSLYVSTRQHSGQR
VLSQVVKVEVYKPLQIHPDYIYLTPGASFVLSVKGGPKTGVYIEYSSLNMEIVEVQNATG
KLSAKAVGNSTVRAAILANGGTLVCEAFGQVEVDIPVAMILNTQSDCLCIGCSMPIYPSL
PKGDLFSFYETCQSYSWVIADEKVVIFQSAKSWQYRLGQGLYSEGKNDPWFSNGSSNSFI
NHMIGRSAGKTKVSISVTCDFLLPGTTGSVVSYNASKTILVVPDPLLALVLPMTWLFPPF
YTTTSLLPRSDSLGEPDSLDLEISVGYSLLRGSGRSGSVIQDASIIDGSKIRTGESNAVD
CIQAKDHSTGRTEIASCLRVAEVAQARITAAESSVQIAYLSVNDRVELDIKYADELGYTF
HEAHGVAPVKIETNYPDVVSILMPRDLNGTGGTHERFVLQARSHGTALIRLHVNHIPNKV
DFIMVSVGAQMYPRDVILHSGQHLNFTIIGDSMDARGSGHWLSSNEKIVHVNRVTGEAQA
SSEGVAEVIFKGSNLKVQTTVSVLKVNQIVVDAPGEALTNAAGPPDGYKFSVRFSDSTEH
NTGSSASPIDVPFECMVDPSFVGYVEPWTDYTTKKSYCLFHPYPPAQMLPVKLNLKEGFL
HILVRANLKEDPKVTGSAHALFVTGFYIKEPGKLNLTPSCNHSIITIGGNTDVELFWNAK
DLLSVSHAETSENKGVPSRIVYRVEALKRQPFSDKVTIVLPATGQTEEVEISYDTGEEAE
PSSSWGLTTFAVILTCIIVPVVTVAFFMKSLERPSRRAPTRNAAASTPVRAPAGSPALLA
DPASPANGQLSPRTPQPFMEYVRRTIDDTPYYKRDGRRRFNPQNTY
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgccgccggccgcggcggcggcggttgcggcggcggtcgcagtcgtggtcgtg
gcagcgctgctgtccgcctccgctgctgccaaccccgcgggcggaccccacatggcggac
ctgagcgtgctgctgccccctcgcatgaccaagcccgtcgagtaccgcctcatcggcggg
gacggatgcttctcctggtcgtgggatcatcatgatcttatttcagttaaaccagagtac
actgatagcagcagatgctcgaccagtgctcgtttggcatcaatttccccttacaatggc
cggagggaaacttctgtctatgcaactgatattatcagtggaatcacgatacactgcaaa
gtattcgtggacaagatctctcggatcaggattttccaccatgctgttaaaattgaccta
gatgaaattgccacattgcgtgttcatgcctttgatgatgaagaaaatgtattctcgtca
ttggtgggattgcagttcttatggcagctttctccaaggttgcttgataacagtagccat
catcttgttcatattccactcaaagaaacacatttgagtgactgtggtggcttttgtggt
gatatgaatgtacggtttgagctagaagataagaatctcggttcagatttctttgtggtg
aagggtattgagatcggccaagaggttgttaaagctcagttatttgagcctcagtttgag
catgtgattgacacaatcacattaactgttgctgaagctatgtcattaaagccaccatca
ccagttctcgtgacagttggtgttttggtgaagtttaaactcaaggtttttcaacaaaaa
gtcgctcaagcggttaagttaccatcaccatatcatcgatggcgtgcaacaaattcttct
gtggcccaagtggatagttccttgggtatctcacgtgctttgagtctgggatttactaag
gttgttgttgaagacacaagagtagaaggccatgaacaagtatcatctctacacgttgtt
attccacgaacactcttcctttatctggtccctattatgaatgattctgctcatcttcat
gggataacaaatattccatcctcaaaagtttggtatgtttatcctggacgaaagtacatg
gtccttgccaaagcgtttgcagagggatttgatgctagggagatatatattacagaggaa
aatgagcttaaactggagagtagtaccatggaattctggaacttatcacgggtgccagac
agttctataggttcttatgaagtgcaaacttctagattgttaaatcctgtttcccagggt
aaaggacatttagttgcttccttaacttaccgaacagagttatctggaccagcaaaggct
ctcaagattgtgcaagaggttaatgtttgtagtaaggtgaaggcattctgggatgaacgg
ttggagaactccaatgttattcacctcccctgggttcctggagtttaccaggaaatcgaa
ctgaaggcaattgggggctgtggtaagacgttggatgactacaagttattttcctctgat
gaagatgttgcttctgtgtctgactctcgtatcgtgcgtgcaaagaagcctggtcaagct
gtcatcagagtagtttctgcttttgatttcttgaactttgatgagatctttgttgaagtc
tccattccttcagtattgtctattctgccagtctttcctgtggaggtgcctgttggaaca
cgacttcatgcttctgcggcgctaaaaacatctaatggacactcattctcacgatgtgac
tattttaatgcttttataaggtggagtgtactatctgataatgagtcttttcacattctt
aacactgcggatgcttcaagcgtcgaggacataaaacgtagtgctgtttcttggggacaa
aatggcaatccttgtgcctggatatatctaagtgcatctgctgctggccgatccacagta
gttgcaacattcacctttgatccagattctaatattgagactcttggacccatttctcta
aaggcaacttcaaaaatttctgcatattatcctctagtggttcttcaagggggaaatgga
aaccaatttggtgggtactggtttgacttgtctggaatacatagtaggattgagaagatg
gataacaacattcccaaggagctctacttagttcctaggtcagcaatggatgttcttctc
tttggaggacctgagcggtgggaccaagtggttgattttgtcgaaacagttgatgtgatt
agtgaatcgaataatcatatttctagttctactgctgtacagaaattatctagtggaata
taccgagtatcttgcccaagcaatgtgaactataaactgctgttctcacgtggaaacatg
attgggaaagatcatcctgtgcctgctatagccaaatcagagttttctgttgtgtgtgac
ttcccatcagaaatcacattgatagcgaatgaaaatgaaaaccaacttgatatattggaa
gctgctagcaaagctgaccgaggtcctgatagattgcaagcatcacctgttgtaatctcc
aatggaagaaatatacgtctagctgctgtgggtatacatggaaatggacggttttttgct
aattcatcttctctttgcctgaaatgggaggctactggatgtgaagggcttgcctacttt
gatgaaaccaaatcttctgaagtgcttgatgagtcagcttgggagaggtttcttgtccta
cagaattctacaggagtgtgcactgtgcgtgctacagtcattggcttctcaaccaaattt
gctggccaaactcatgaggaacgcacatttcatactctcacagatgctattcaattgcag
cttgtttcttccttgagagtcactccagaatatgtcttgttagttttccatcctgacgca
caggaaaatttgattgtcagtggtggaacatgctccctagatgcttctaccaatgacacc
catgtggtgcaaatagttaaacatccaggaaaatacttatgttctcaattgattcttgga
gctaatggcttgggcaaagctatcgtcacaatccaggatgttggcctttctcctagagca
acaactcattctttggctagagttgcaaatgtcgattggattaagataattgcagaagag
cacatcagccttatggaaggaagcacaaaagattttcaaatattggctggaacccaagat
ggacaaacatttggcgattctcagttcaaatatatgggcattgaattgcacattggtgac
gagattctggagcttattagtccaatggactcaatggatggacccaaattttcaatcaaa
gctgcaaaaactgggataacatctctatatgttagtactaggcaacactctggacaaaga
gttttgagtcaggtcgtaaaggtggaggtgtacaaaccattgcaaatacatcctgattat
atttacctcactccaggcgcctcttttgtgctttccgttaaaggtggtccaaaaactgga
gtttacattgagtactcaagtctgaacatggaaattgtagaagttcaaaatgctactggg
aagctatctgcaaaggctgtggggaactctactgtacgtgctgctattttggcaaatgga
ggtaccctagtttgtgaagcttttggacaagtcgaagtggatatcccagtggctatgatt
ctgaatactcaaagtgactgtctttgtattggttgtagcatgccaatctatccttctctg
cctaagggagatctattttccttctatgaaacttgccaaagttacagttgggtgatagca
gatgagaaggttgtgatattccaatcagctaaatcttggcaatacagacttggccaaggg
ctatattcagaaggaaaaaacgatccatggttttccaatggcagtagcaattcttttatc
aatcatatgattggaaggtctgctgggaaaaccaaagtttccatttcagtcacttgtgac
ttcttgctacctggcaccactggatctgttgtatcatacaatgcctccaagaccattctg
gtggttccagatcctctccttgcacttgtacttcccatgacttggctattcccacccttt
tatactactacgagccttttgcctagatcagattcacttggagaaccagactcacttgac
ctggaaatttccgttgggtattctctgctaaggggcagtggtaggagtggttctgtgatc
caagatgctagcataattgacggaagtaagattaggactggagaaagcaatgcagttgat
tgtattcaagcaaaagaccactcaactggaagaacagaaatagcatcatgtctacgagtt
gctgaggttgcacaagcacggataactgctgcagaatcatcagtccagattgcttatcta
tccgtaaatgatagagttgaattggatataaaatatgctgatgaattaggttataccttc
catgaagctcatggagtagcccctgtaaaaatcgagacaaattatcctgatgttgtctcc
attctcatgccaagagatttaaatggtacaggtggcacacatgaacgttttgttcttcag
gcgagaagtcatgggacagctcttataaggctgcatgtaaaccatattcccaataaagtg
gatttcataatggtatctgttggtgcacaaatgtatcctagggatgtgatccttcattct
ggacagcacctgaacttcactattattggagacagtatggacgcccgtggatctggtcac
tggttaagtagcaatgaaaagatcgtgcatgtcaatcgggtaactggtgaagcacaggca
agtagtgaaggtgtagcagaagtaatcttcaaaggttcaaatcttaaggtgcaaacaact
gtcagtgtgctcaaggtgaaccaaatagttgttgatgctcctggagaggcgctgactaat
gctgctggcccacctgatggatataagttctctgtaagattcagtgattcaactgagcac
aacactggatcctctgcgagtccaattgatgtcccgtttgaatgcatggttgatccttct
tttgttgggtatgttgagccatggactgactataccacaaagaaatcctattgcctgttt
catccatatccacctgcacagatgctgcctgtgaagttgaacctgaaggaaggattttta
cacattttagttcgtgcaaatctaaaggaagacccgaaggtgacaggatccgcacatgcc
ctttttgtcacgggattttacatcaaagaacctgggaagttaaatttgactccaagttgc
aaccatagcatcattactatcggtggaaatactgatgttgagttattctggaatgctaaa
gatttactctcagtcagccatgctgaaacaagtgagaacaagggtgttcctagtcgaatt
gtctacagggttgaagcgctaaaaaggcaacccttctctgacaaggtcactattgttctt
cctgccactggccagactgaagaagtcgagatcagctatgatacaggagaggaggcagag
ccttcatcatcatggggcctaaccacatttgcggttatcctcacatgcatcattgtacca
gtagttacggttgctttcttcatgaagtcgctggagaggcctagcagacgtgcaccaaca
aggaacgcggcagcatctacaccggtgcgagcaccggcaggcagtcccgccctgctggcc
gaccctgcatccccagctaacggccagctctcgcctcgcacgccccagccattcatggag
tacgtgcggagaaccatcgacgacacgccctactacaagcgcgacggcaggaggcgattc
aaccctcagaacacgtactga
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