Panicum virgatum (switchgrass): 120661594
Help
Entry
120661594 CDS
T07260
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
KO
K16189
phytochrome-interacting factor
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120661594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120661594
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
120661594
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_IRO3
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
120661594
NCBI-ProteinID:
XP_039796419
LinkDB
All DBs
Position
2K:3750600..3754980
Genome browser
AA seq
518 aa
AA seq
DB search
MPADASLSLSLSQTDAAPHGLFLRSLNLGGRTERERARIQPLVGRSIAGGILVLPRSYAQ
VAELFYKKSSAVGGTSARPGPRSGYSPWTAARGRRRPRRDPSRNQSFLLPLLHCFLAARL
VFLIRSSFAPFHSARRSPDGELVELLWQDGAVVAHSQAAQRAFAGAGNTGASGVTGEAAA
WLPGGGALGGDVYSQLWQSIAQADGRVGARPPARSGNSAAGSSRTAGEVGSSFCGSNLVA
AARHLDDDIDDVAALPPPPPPGDEPGACGGASTSSGWNSNALLKRSRDELDFRSEDADLD
TVDETPASRRPASKRRTRAAEVHNMSERRRRDRINEKMRALQELVPHCNKTDKASILDEA
IEYLKSLQMQVQIMWMSTGMAPMMLPGAHQLMPPMSMGLNSAYMPPAAQFLSQIQTVPPF
LSNPLPNQIPQISPASTSAPNVTNQVQSNRMAQPRNPFLHPNDALTSTPQGPNSLQLPSL
FGYGPQMAQENAIQELLACTAAPALDAEQLSSSDGTGT
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgccggcggacgcctctctctctctctctctctctcaaaccgatgccgccccccacggg
ttgttcttgcgttctctgaacctggggggaaggacagagagagagcgtgcccggattcag
cctctggtcggccggagcatcgctggtggtatactggtattgccgcgcagctacgcacaa
gttgcggagctcttctacaagaagagctcggcggtcggaggtacctcggcgcgcccgggt
ccaagaagtggatactcgccatggacggcggcgagaggccggcggcgacccagaagagac
ccttcccgtaaccaaagctttcttctccccctgctccattgctttcttgctgcgcgtttg
gtgttcttgatccgttcaagctttgctcctttccactcggcgcggcgcagtccggatgga
gagctcgtggagctgctgtggcaggacggcgccgtcgtggcgcactcgcaggcggcgcag
cgggccttcgccggcgccggcaacacgggcgcgagcggcgtcaccggagaggcggcggcg
tggctcccgggaggcggcgcgctgggcggggacgtgtactcgcagctctggcagagcatc
gcgcaggccgacggccgcgtgggcgcccgcccgcctgccaggagcgggaacagcgccgcc
gggtcgagccggacggccggcgaggtcgggtccagcttctgcggcagcaacctcgtggcg
gcggcgcggcacctggacgacgacatcgacgacgtcgcggcgttgccgccaccgccaccg
ccgggggacgagccgggcgcgtgcgggggcgcgtccacgtccagcggctggaacagcaat
gcgctgctcaagaggagcagggacgagctcgatttccgcagcgaggatgccgacttggac
accgtcgacgagacaccggcgtcgaggcggccggcgtccaagcgcaggacgcgcgccgcc
gaggtccacaacatgtcggagaggaggagaagggaccggatcaacgagaagatgcgagct
ttgcaagaactggtgccccactgcaacaagaccgacaaagcatcaatactagatgaggca
attgagtacttgaagtcactccaaatgcaagttcagatcatgtggatgagtactgggatg
gcgcccatgatgctcccaggtgctcaccaactcatgcctccaatgagcatgggcttgaat
tctgcctatatgccaccggcggcgcaattcctcagtcagattcagacagtaccacccttc
ctcagtaacccgctgccgaatcagattcctcagatctcacctgcatctaccagtgcaccc
aatgtaacaaaccaagttcaaagcaaccgcatggcccagccgagaaatccatttcttcat
cctaatgatgcattgacatcaacacctcagggtcccaattcattgcagttaccgagttta
tttggctatggaccacagatggcacaagagaacgcgattcaagagttactggcttgcact
gctgctccagctttggacgcggagcagctgtcttcctctgacggaacaggaacctaa
DBGET
integrated database retrieval system
