KEGG   Panicum virgatum (switchgrass): 120661901
Entry
120661901         CDS       T07260                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RKP-like
  KO
K12169  Kip1 ubiquitination-promoting complex protein 1 [EC:2.3.2.27]
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120661901
Enzymes [BR:pvir01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     120661901
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    120661901
  Multi subunit type E3
   KPC complex
    120661901
SSDB
Motif
Pfam: RKP_N SPRY zf-C3HC4_3 Ufd2P_core zf-RING_2
Other DBs
NCBI-GeneID: 120661901
NCBI-ProteinID: XP_039796843
LinkDB
Position
2N:66241206..66249158
AA seq 1272 aa
MAEGSCSHRRSAFSPGLAVLLSGEEAKVSPQKTHLVSYHDEIGHQAVERTIEHILDLPHK
SVVRPPGPIDAVFVRSVLRNQARKLDLDWDKCIRGYRGSVLIVDKGSGQSKVVLDDSSIC
GKFRSVRGPLLVESSAPFSSARANACVWKGKWMYEVTLETSGVQQLGWATLSCPFTDQKG
VGDADDSYSFDGRRVTKWNNDPKPYGQPWAVGDVIGCCINLDAGEISFYRNGTSLGVAFD
RIRSVEPSKGYYAAISLSEGERCHLNFGSHPFRYPVDGFEPMEAPPRSWTFTTYILRCLF
RLLEVQNLEKSESAYFEKLRRVKKFAPLQELFRPISEAICAEFFSAIEMSQGCLEYIAWG
SLTTFLLDVFRAREPHDFSCLDQVLDLFLQFPGCSSLLQELIVALSCMCKAAPLVLTECP
YSGSYPFLALVCHLLRHKDVMLLWFNSEDFAFSFEGFLTRKIPNKHDLQCLVPSVWWPGS
SEDEVSMTLSMTTLSDAIKKIEEMHRELCSLVICFIPPVSPPQPPGSVFRSFVQGSVLKA
RGGDHRMVVNGTYNNTVLVSLYTVILHLLSEGFSMDSSGSASSSKVNCGNGVGFLHKGGK
RKFPTQLLFRNDAYYSIIPRIGGPPSILMHHQFDDVEDEVQWDEGCMNDEDTRVTHTTVQ
KPCCCSVTDASIDLRYKESARYVPSTSKVPCKPMPDRTAHVAAECNGRSLSDEIEDKPST
STQSEIEYGYQALHNLESMPMTTQSSSEALKEEELLDLMLLLYHLGISPNFRQAFYFMSQ
QSQSISLLEETDRQIREKSCAEQVRRLKEARNSYHEDLVDCVRHCVWYRATLFSPWKQRG
MYATCMWVVELLLVLSDSKTIFQYVPEFYVESLVDCFHALRRSDPPFVSPAVFLRQGLAS
FVTLVVKHFDDTRIVNPDLKDLLLQSISVLVQYKEFMLVFENNREAINRMPRSLLSAFDN
RSWIPVSNILFRLCKGSGFASSKNGESSSSAIFQVLLRETCIHEEELFFSFLNRLFNTLS
WTMTEFSMSIREMQDKHQVADLQQRKCSVIFDVSCNLARILEFCTREIPCAFLMGPDMNL
RRLTELVVFILNHIISAADAEFFDMTLRRPGQHQDKTNRTMMLAPLVGIILNLMECSSTS
ERRELNDVIAVFASMDCPATIHFGLQYLLSYNWSNVLRGDASLAKLAQLEEFSHYFRRIT
MAVDGEEVRSLNTGDEEEDDTCCICYNCDSDATFQPCHHRSCFGCISRHLLNSQRCFFCN
AVVTSVTRIADS
NT seq 3819 nt   +upstreamnt  +downstreamnt
atggcagaaggaagctgtagccataggaggagtgctttctcccctgggctagctgtgtta
ttgtctggcgaggaagctaaggttagcccccagaagacgcacttggtttcctatcatgac
gagattgggcaccaagctgttgagaggactatagagcacattcttgatctccctcacaag
tcagtggtccggcctcctggaccaattgatgcggtctttgtgcgctcagtgttgaggaat
caggctagaaaattagatcttgactgggacaaatgtatccgtggataccgtggtagcgtc
ttgattgtagacaaaggttctgggcagagcaaggtggttcttgatgattcaagcatttgc
ggtaaattcaggagtgtcaggggaccattacttgttgagagttctgccccattcagcagt
gctagggctaatgcctgtgtgtggaagggcaagtggatgtatgaggtgaccctagagact
tctggagttcaacagcttggatgggctactctctcttgtccttttactgatcagaaaggt
gttggtgatgctgatgattcatattcatttgatggccggagggtgactaagtggaacaat
gacccaaagccatatggccagccatgggcagtaggggatgtgatcggttgctgcatcaac
ttggatgcaggagagatctccttttacaggaatgggacatctcttggtgttgcatttgat
cgaattcgcagtgtggaaccaagcaagggctactatgcagcaatctccctctcagaaggt
gagcgttgtcatctgaacttcggctcacatccgttcaggtatcctgttgatgggtttgaa
ccaatggaggcaccaccacgctcttggacatttacgacttatattcttagatgtttgttc
cgattgctagaagtacaaaatctggagaaatctgaatcagcgtacttcgaaaaactgagg
agggtcaaaaaattcgcaccactacaagaactttttcgaccaatttcagaagcaatctgt
gcagagttttttagtgctattgaaatgagccaagggtgccttgagtatattgcctggggc
tcattgaccacttttctcttagatgttttcagggcacgtgagcctcatgatttctcatgc
cttgatcaggttctcgaccttttccttcagttcccaggttgcagctcattattgcaggag
ctcattgtggcactttcttgcatgtgcaaagctgcaccacttgtgctgacagaatgccca
tattctgggtcgtatccatttttagcgctggtttgccaccttcttaggcataaggatgta
atgcttctatggtttaactcagaagattttgcattctcatttgaagggtttcttacaaga
aagataccaaataagcatgatttacagtgccttgtaccatctgtttggtggcctgggtct
tctgaggatgaggttagcatgacactgtcgatgacaacactctcagatgcaatcaagaag
attgaggagatgcatcgtgagctttgcagcttggtaatatgctttattccaccagtttct
cccccccagcctccaggctctgtatttaggtcctttgtgcaaggttcggtactgaaagct
agaggtggagatcataggatggttgtcaatgggacttacaacaatactgtgcttgtttca
ttgtacaccgtaatcctccatttgttgtctgaaggattttccatggattcttctgggtcc
gcatcatcctctaaagtgaattgtgggaatggggttggatttcttcacaaaggtggaaag
cggaagtttccgacacaattacttttcaggaatgatgcctattatagcataattcctaga
attggtggaccaccaagtattttgatgcatcaccaatttgatgatgtggaagatgaagtg
cagtgggatgaaggctgcatgaatgatgaggatacgcgtgtaacacacactacagtacag
aagccttgttgctgctcagtcacagatgccagtattgacctaagatacaaagaaagtgct
aggtatgtaccatcaacttcaaaagtcccatgtaagcccatgcctgatagaactgctcat
gttgctgctgagtgcaatgggagaagtctgagtgatgagatcgaagacaagcctagcaca
agtactcaatcagaaattgaatatggataccaagcattgcataatcttgaaagcatgcca
atgacaactcaatcttcatcagaagcacttaaagaggaagagctgcttgatcttatgtta
ttattatatcatctgggcatctcaccaaattttaggcaggcgttttatttcatgtctcag
cagtcacagtccatttctttactagaagaaactgacaggcaaatacgagaaaaatcatgc
gcagagcaagtaaggcgtttgaaagaagctaggaatagctatcatgaggatttggtggat
tgtgtacgccattgtgtttggtaccgggctactcttttctctccatggaaacaaagggga
atgtatgcaacttgcatgtgggttgtggagcttcttttggtgcttagtgactcaaaaacc
attttccagtatgttccagagttctatgtggaatcactggttgattgtttccatgccctg
cgaaggagcgaccctccttttgtttcacctgcagtattcctcagacaagggctggcatca
tttgtcactctggttgtcaagcactttgacgatacgaggatagtgaatccagatttgaaa
gatcttcttcttcaatcaatttcggtccttgtacagtacaaagaattcatgcttgttttc
gagaacaatcgggaggctataaatagaatgccaagatcacttttatcagcttttgacaac
agatcatggattcctgtttctaacatacttttccggctttgcaaaggctccggatttgca
tcctctaagaatggtgaatcttcatcatctgcaatttttcaggttctacttagggagaca
tgcattcatgaagaagaactgttcttttccttcctcaatcgacttttcaatacactcagc
tggacaatgaccgagttctcaatgtccatccgagagatgcaagataaacaccaggttgct
gatctgcagcaaaggaagtgcagtgtaatttttgatgtatcatgtaatcttgcaaggatc
ttggaattctgtactcgagagatcccttgcgcattcctcatgggaccagatatgaatttg
cggaggttgactgaattggttgtctttattctcaaccacatcatatcagcagctgatgca
gagttctttgacatgacactaagacggccagggcagcatcaagataaaacaaatcgtact
atgatgttggctcctcttgtaggcattatcctcaatcttatggaatgcagcagcacatca
gaacgtagggagctaaatgatgtgattgcagtgtttgcaagcatggattgccctgctaca
atccattttgggttgcagtacctactgagctacaactggagcaatgttctccgaggggat
gcctcccttgcaaagctagcacagcttgaagagttctctcattacttccggcgcattaca
atggctgtagatggtgaagaagttcgtagcctaaacacaggtgatgaggaagaagatgac
acctgttgcatttgctacaactgtgattcggatgcaacattccagccatgccatcacagg
tcctgctttggctgcattagcaggcatctcctgaacagccagaggtgcttcttctgcaat
gctgtagtaacatcagttacgaggatagccgattcatga

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