Panicum virgatum (switchgrass): 120666899
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Entry
120666899 CDS
T07260
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
KO
K16189
phytochrome-interacting factor
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120666899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120666899
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
120666899
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Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
DUF6788
Motif
Other DBs
NCBI-GeneID:
120666899
NCBI-ProteinID:
XP_039802817
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Position
3N:66799685..66803168
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AA seq
468 aa
AA seq
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MNQYVPDWSSSMGEAFATLNGDDEGLMELLWCNGHVVMQSQAPGKPTRPEKVAAAAAAVV
QDDEAAAWFQYPAEDALERDLFTELFGEEQAECAAHRSAMMTPPPREKACPGDLGDVSHA
AAARAAAGGECAATTTEAVVESSMLTVGSSFCGSNHVQTPRARAGAPPPGAAGKSGGRAR
DAATVTSSSMRPPSCTTRTGQPGATAHRSGKRNKPSDAAETEDAEFQSADATCEPAQKLT
TAKRRRAAEVHNLSERRRRDRINERMKTLQELIPHCNKTDKASMLDEAIEYLKSLQLQLQ
MMWMGGGMAAAAPVMFPAGVHQYMQRMVAPSHVASMPRMPFMAPPAVQSPPGADPYARYL
AVDHLQPPPPPAAAAPMVPPIRRWTSATMHARMPPLFPERFQQHYLQGMGFYQQQQQQQQ
SPAPPPPPPPAVPASSLPAATARTSPPDGTLHKKYENCGKPEIQCITS
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagtacgtccctgattggagcagcagcatgggggaagccttcgcgacattgaac
ggcgacgacgaggggctcatggagctgctgtggtgcaacggccacgtggtcatgcagagc
caggcgccggggaagccgacgaggcccgagaaggttgctgcggcggcggcggcggtggtg
caagacgacgaggcggcggcgtggttccagtacccggcggaggacgcgctcgagagggac
ctcttcacggagctcttcggggaggagcaggcggagtgcgcggcccaccggagcgcgatg
atgacgccgccgccgcgggagaaggcgtgcccgggggacctcggagacgtctcgcacgcc
gccgcggcgagggcggccgccggcggcgagtgcgcggcgaccacgacggaggccgtcgtc
gagtcgtccatgctgacggtcgggtcgagcttctgcgggagcaaccacgtgcagacaccg
cgcgcccgcgccggcgcgccgccgccgggggccgctgggaagtccggcggcagggcccgc
gacgcggcgacggtgacctcgtcgtcgatgcggccgccgtcctgcaccaccaggaccggg
cagccaggcgccaccgcccaccgcagcggcaagcggaataagccgagcgacgccgcggag
accgaggacgcggagttccagtccgccgacgcgacgtgcgagccggcgcagaagctgacg
acggccaagcggcggcgcgccgccgaagtgcacaacctctcggagcggagacgaagggac
aggatcaacgagaggatgaagaccctgcaggagctcattccccactgcaacaaaacggac
aaggcgtcgatgctggacgaggcgatcgagtacctcaagtcgctgcagctccagctgcag
atgatgtggatgggcggcgggatggcggcggcagcgccggtgatgttcccggcgggggtg
caccagtacatgcagcggatggtggccccttcccacgtggcgtccatgccaaggatgccg
ttcatggcgccgccggccgtgcagagcccgccgggggccgacccctacgcgcgctacctc
gccgtcgaccacctgcagccgccgccgccgccggcggcggcggcccccatggtaccaccc
atacgccgctggacttctgccacgatgcatgcacgtatgcctccgctgtttcctgagaga
tttcagcagcattacctgcaggggatgggcttctaccagcagcagcagcagcagcagcag
agcccggcgccgccaccgccgccgccacccgccgtgccggccagcagcctgccagcggcg
actgcacggacgtcgccacccgacggcaccctgcacaagaaatacgaaaactgtggcaag
cctgagatccagtgtatcaccagctga
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