Panicum virgatum (switchgrass): 120668827
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Entry
120668827 CDS
T07260
Name
(RefSeq) BRISC and BRCA1-A complex member 2-like
KO
K12173
BRCA1-A complex subunit BRE
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120668827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120668827
03036 Chromosome and associated proteins [BR:
pvir03036
]
120668827
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120668827
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
120668827
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
BRISC complex
120668827
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
120668827
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
120668827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE
Motif
Other DBs
NCBI-GeneID:
120668827
NCBI-ProteinID:
XP_039804552
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All DBs
Position
4N:complement(49483119..49488910)
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AA seq
391 aa
AA seq
DB search
MSPSADPAAPASTSAPPLAPLVAAQLSYLLSHSKLPIRVGQIWSGCRNGRHSDRFTLSIP
FCLDYVHWDFVYNALSPKVAPDVVFGPEDEGFQPLIDYADAGNDKSCLARWDYRDPSGLF
ALVHELRELYIEYHKKQVDKVDDARVTFELSTVLSKEGIEVCMVPSADRPDEVKFAVPLL
DVDFDFNKLVPGCPWRLPQKIHLQVIFPISRSSSYSSVPSAPRLKLISTPDLKSLFSVED
VKLPPWSNGMCLAEYLPALEESLNLLVVEASASIGARRRFIEALVPTFGRPIEADPIFCR
RATVLSISGVFTFLVHFAIPLQFPKQQPILTLQSSQHCNADGAPITSPPINDYPWSPRWD
QAEMVERIYDFLADECQNFKKYCSDVLTQHK
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgtcagccgatcccgcagcgccggcgtccacctcggcgcccccgctcgcgccc
ctcgtcgccgcgcagctcagctacctactctcgcactccaagcttcccatcagggtggga
cagatctggtccggctgccgcaacggccgccactccgatcgattcacgctctccatcccc
ttctgcctcgactacgtccactgggatttcgtgtataatgccttgtctcccaaggtggcg
cccgacgtggtgttcgggccggaagacgaggggttccagccgctgattgattacgccgac
gctggaaatgacaagagctgcttggcacgctgggattaccgcgatcccagtggactcttt
gctctcgtgcatgagctccgggaattgtacattgaataccacaagaagcaggttgacaag
gtggatgatgcaagggtgacgtttgaattaagtacagttctctctaaggaggggattgaa
gtctgcatggtaccttccgctgataggccagacgaggtgaaatttgctgtaccacttttg
gacgtcgactttgacttcaacaaactggtgccaggctgtccttggagattacctcaaaag
atccatctacaggtcatttttccaatcagtagaagttcaagttactcttctgttccttct
gctccacgactcaaactaatctcaacaccggatttgaaatcacttttctcagttgaggat
gtgaaactccctccatggtcaaatgggatgtgtttggcggagtatcttcctgccttagaa
gaaagtcttaacctgctggttgttgaggcatcagcttcaattggtgccagaagacgtttt
atcgaggcactggttcctacctttgggagaccaatagaggctgatccgatcttttgcagg
agggctacagtgctttccatttcaggagttttcacatttctggtacactttgccatcccc
cttcagttcccaaagcaacaacctatcctcacattgcagagttctcagcactgtaatgcc
gatggggcacctattacatcacccccaataaatgattatccctggagtcctagatgggat
caggcagaaatggttgaacgaatctatgacttcctggccgatgagtgccaaaatttcaag
aagtactgcagcgacgttctcactcagcacaagtag
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