KEGG   Panicum virgatum (switchgrass): 120669117
Entry
120669117         CDS       T07260                                 
Name
(RefSeq) putative DNA glycosylase At3g47830
  KO
K10773  endonuclease III [EC:3.2.2.- 4.2.99.18]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    120669117
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120669117
Enzymes [BR:pvir01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     120669117
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     120669117
 Prokaryotic type
     120669117
SSDB
Motif
Pfam: HhH-GPD hnRNP_Q_AcD
Other DBs
NCBI-GeneID: 120669117
NCBI-ProteinID: XP_039804860
LinkDB
Position
4N:11028414..11034397
AA seq 271 aa
MEPKRKAPASPAAREASPEPYPTHASPSPAQCLAVRDALLGFHGFPEEFAPFRRLRLGGS
GDSPPPLPPTVLDGLVTTLLSQNTTEAISRRAFASLKAAFPSWDQVVDEEGTRLEDAIRC
GGLAATKAARIRAMLRGVRERRGKICLEYLRELSVDEVKRELSQFKGIGPKTVACVLMFY
LQKDDFPVDTHVLRITKAMGWVPVTASREKAYIHLNSKIPDDLKFDLNCLIVTHGKLCQT
CAKKMGGEKSKVPNAACPLASYYRVGEKLQQ
NT seq 816 nt   +upstreamnt  +downstreamnt
atggaacccaagcggaaggctccggcctcgccggcggcgcgcgaagcctcgccggaaccc
taccctacccacgcctccccctccccggcgcaatgcctcgccgtccgcgacgcgctgctc
gggttccacggcttccccgaggagttcgcgcccttccgccgcctccgccttggtggcagc
ggtgactctccgccgcctctgccccccaccgtcctcgacgggctcgtcaccaccctcctc
tcccagaacaccaccgaggccatctcccgccgcgccttcgcctccctcaaggccgcattc
ccctcttgggaccaggtggtggacgaggaggggacgaggctggaggacgccatccggtgc
ggcgggctggcggcaacgaaggcggcgaggatacgggcgatgctgaggggcgtgagggag
cggaggggcaagatttgcctcgagtacctgcgggaactgtcggtggatgaggtgaagagg
gagctatcgcagttcaaagggattgggccaaagaccgtggcatgcgtgctgatgttctat
cttcagaaagatgattttccagtagatactcatgtacttcgcattacaaaggctatgggt
tgggttccagtaacagctagcagggagaaggcatacattcatctaaatagtaagatccca
gatgatctgaaatttgatctgaattgtcttattgtaactcatgggaagctttgccaaaca
tgtgccaaaaagatgggaggtgagaaaagcaaggttcccaatgctgcctgtccactagca
agttactatcgtgttggtgaaaagcttcagcagtag

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