Panicum virgatum (switchgrass): 120671823
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Entry
120671823 CDS
T07260
Name
(RefSeq) sphingosine kinase 2-like
KO
K04718
sphingosine kinase [EC:
2.7.1.91
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00600
Sphingolipid metabolism
pvir01100
Metabolic pathways
pvir04148
Efferocytosis
Module
pvir_M00100
Sphingosine degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
120671823
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120671823
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.91 sphingosine kinase
120671823
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Motif
Pfam:
DAGK_cat
YegS_C
CERK_C
Motif
Other DBs
NCBI-GeneID:
120671823
NCBI-ProteinID:
XP_039808007
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Position
5N:complement(59657295..59661847)
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AA seq
496 aa
AA seq
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MEDRATANVRVDGAPAEATLGGGELRWRRAGSGGAAGERALSLERDVLGVEARGKEVVVR
AFVAAGAARARSCAPGAGAGGKGAGRRCRRDFVLEMADGEGAAAAWGERLARCLDSFGRP
KRLFVFVNPFGGRKCAKKIYDSEIKPLFEAAGVSITVQETECQGHAREVASSLDLGKYDG
IVCVSGDGVLVEVVNGILQRTDWEEAIKMPIGVVPAGTGNGMAKSLLHAAGETCSVSNAV
LAIIKGYKQSLDVCTILQGEKKFFSVLLMTWGLVADIDIESEKYRWMGSARFDFYAVVRI
MSLRKYCGSIQFVPAPGYESYGEPVKQVENSILESLEQSGKSHPSSYPGPSVEFQASDWR
FVDGPFVAVWINNVPWAAEDIMAAPEAKFSDGCMDAIILRDCPKADLLALLMKMSDGSYV
KSPYVTYLKVRSFKLSPGQLVENPKRGGIIDVDGEVIARGEGTYGKCHQDVMAYGSPIQL
TVHQALATIYCPNKIR
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccgcgccacggccaatgtccgcgtggacggcgcgccggcggaggcgactctc
gggggcggggagctgcggtggcgccgcgcgggaagcggcggcgcggcgggggagcgggcg
ctgtcgctggagcgcgacgtgctcggggtcgaggcgagggggaaggaggtcgtcgtgagg
gccttcgtggcggcgggcgcggccagggcgaggtcgtgcgcgcccggcgcgggcgcggga
gggaagggagccgggaggcggtgcaggcgggacttcgtgctcgagatggccgacggcgag
ggcgccgccgcggcgtggggcgagaggctggcacgctgcctcgactcgttcggccgcccc
aagagattgttcgtcttcgtcaaccccttcggcggcaggaaatgcgcgaagaagatctac
gactcggaaatcaagcctctgtttgaagctgctggcgtgagcatcaccgtgcaagagacg
gagtgccagggacatgcccgggaggtggcgtcttccctcgaccttggaaagtacgacggc
attgtctgcgttagcggcgacggtgtcctcgtggaggtagtaaatggaattcttcaacga
acagattgggaggaggcgataaagatgccaattggggtagttccagcaggtacaggaaat
ggcatggccaaatcacttctgcatgctgccggtgagacgtgctcagtttcaaatgctgta
ttggcaattatcaaaggttacaagcagtccttggatgtttgtactattttgcaaggggag
aagaaatttttcagtgtcttgttgatgacttggggtttggtggccgacatagatattgag
tctgagaaatacaggtggatgggaagtgcacgcttcgacttctatgctgtggttcgcatt
atgagcttgcgaaagtactgtggaagtattcagttcgtacctgccccaggctatgagtca
tatggagaacctgtcaagcaagtcgagaattccatcctagagtctctggagcaaagtgga
aaatcccacccgtcttcttatccaggtccatcagttgagtttcaagcttcagactggaga
tttgttgatggtccatttgttgcagtctggataaacaatgtgccatgggctgccgaggat
ataatggcagctcctgaagcaaagttctcagatggctgtatggatgcaatcatactcaga
gattgtccaaaggctgatcttttagctctactgatgaagatgagcgatggtagctatgtc
aaatcaccatatgttacatatctcaaggtgagatcatttaaattatctccaggccagctt
gttgagaacccaaaaaggggtggcattatagacgttgacggcgaggtaattgctagagga
gaaggaacgtatggaaagtgccatcaagacgtgatggcttatggctctcctattcagctg
acagtgcaccaagcattggctaccatatattgccctaacaaaattcggtga
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