Panicum virgatum (switchgrass): 120672004
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Entry
120672004 CDS
T07260
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120672004
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120672004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120672004
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
120672004
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
120672004
NCBI-ProteinID:
XP_039808218
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Position
5N:16017004..16020222
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AA seq
635 aa
AA seq
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MLLFQSVLACLRSSCMYVGCRSDGNEFAELLWENGHAVVHGRRKQPPQTSFPPFTCGAAS
SSRAQEKQPGGDPVALLKTGGVFGAGGLAPSLHDFSSGLDATRDNGDLDDTVPWIHYPII
EEDTAEPALAGSYSPDFFSELHAAAAAATNLGSLPPPVQHTNTNRSNPVVTTSREPEPSK
ESHRLPIPGPATWPEPQAEFAATKQPRLGGSGEGLMNFSLFSRPAAMARASLQNAQRPPQ
TGTDKASNVTTSTRVESTVLQSARGARAAPGFTEQRTAWPQQPKEVRFSCTAAPTAGNLQ
QEMPPDRLASMALQKKVETRKAPEAAVATSSVCSGNGAGTGNDESWRQHKRKSQAECSAS
QDDDLEDESGGMRRSGSRGTKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKA
SMLDEAIEYLKTLQLQVQMMSMGSGLCIPPMLLPPTMQHLQIPPMAHFPHLGMGLGYRMG
VFDMNSTPAVPFPSMPGAHFPCPMIPGPPPQGLGMPGRNTVPMFGLPGQAIHPPASSVQP
FPYLAGLPVRPNLPPQVSAAMANMVQQQDVATQQQQNMNNEARRGANTGDPELQTILQVE
NRHFSVPSSAQTESGQFLDSGSNRTDTAERNGPET
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcttctgttccaatcggttcttgcttgcttacggtcctcgtgcatgtacgtgggatgc
aggtccgacggcaacgagtttgcagagcttctgtgggagaacgggcatgcagtggtgcac
gggcggaggaagcagccgccccagacctcgttcccgcccttcacctgcggcgctgccagc
agcagccgggctcaagaaaagcagccgggcggtgaccccgtggcgctgttgaagacagga
ggtgtcttcggtgccggcggcttggccccgtcgcttcacgacttctcctccggcctagac
gccacccgtgataacggtgatcttgatgacaccgtgccctggatccactaccccatcatc
gaggaagacaccgccgagcctgcccttgcgggcagctacagcccggatttcttctcggag
ctccatgcagcggcggcggcggcgacgaacctcggctccctgccaccacctgtccagcac
accaacaccaacaggagtaacccggtcgtcaccaccagcagagaaccagaaccctcaaag
gaaagccaccgcttaccgattccaggtccagccacctggcctgaaccacaagccgagttc
gcggccaccaagcagcctcggctgggcggcagcggagagggcttgatgaacttctccctc
ttctctaggccggccgccatggcgcgagcaagcctgcagaacgcgcagaggccgccacaa
acaggcacggacaaggcttccaatgtcaccacgagcacccgtgtggagtcgacggtcctc
cagtcggccaggggggcaagagctgcccctgggttcacggagcagaggacggcgtggcca
caacagcccaaggaggtgcggttctcctgcacggcagcaccgacagctggtaacctgcag
caagagatgcccccggacagacttgccagcatggctctgcagaaaaaggttgagaccagg
aaggcgcccgaggccgcagtcgcaacttcgtcggtctgctccggcaatggcgctggaaca
ggaaatgacgagtcctggcgccaacacaagaggaagagtcaagccgagtgctctgctagc
caagatgatgaccttgaagatgagtccggtggcatgagaagatctggcagcagaggcacg
aagcgcagtcgcaccgccgaggtgcacaatttgtcagaaaggaggagaagagaccggatc
aacgagaaaatgcgcgccttgcaagaactcatccccaactgcaacaagattgacaaagct
tcaatgctcgacgaagcgattgagtacctcaaaacccttcagcttcaagttcagatgatg
tccatgggaagtgggctgtgcattcctccaatgctgctgccaccaaccatgcagcacttg
caaatccccccaatggctcatttccctcatcttggcatgggtttggggtataggatgggt
gtcttcgacatgaacagcaccccagcggttccatttccgtctatgcctggtgctcacttt
ccttgcccaatgatcccaggcccaccaccacaaggtcttggaatgcctggcagaaacacg
gtaccaatgtttggacttcccggtcaagcaatacatccaccagcatctagtgtacaacca
tttccatatttggctgggcttcctgttaggccaaacctgccccctcaagtctcagcagcc
atggctaacatggtgcagcagcaagacgtagcaactcaacaacagcagaacatgaataat
gaagctcgacggggagcaaatacaggagatccagaattacagaccatcctgcaggttgag
aaccggcattttagtgtaccctcttcagcacaaacagaaagcggtcagttcttggatagt
ggcagcaacaggactgatactgcagagagaaatgggcctgaaacataa
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