Panicum virgatum (switchgrass): 120672741
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Entry
120672741 CDS
T07260
Name
(RefSeq) putative ataxin-3 homolog
KO
K11863
Ataxin-3 [EC:3.4.22.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120672741
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120672741
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120672741
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C86
120672741
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
MJD
120672741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Josephin
UIM
UIM_2
Motif
Other DBs
NCBI-GeneID:
120672741
NCBI-ProteinID:
XP_039809236
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All DBs
Position
5N:complement(63972566..63976228)
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AA seq
333 aa
AA seq
DB search
MDAAASNGGLLYHEVQEGKLCAVHCVNTALQGPFFSEFDLAALAADLDQRERLVMLEGSQ
SPGAANAAAGDFLAEGSHNVSLGGDFSIQVLQKALEVWDLQVIPLDSPAAGSSLFDPEQE
VAFICHLQDHWFCIRKVNGEWYNFNSLYPAPEHLSKFYLSAFIDTLKGSGWSIFAVRGNF
PKECPMATEGSNGFGQWLTPDDAQKITASCNQVQTPTHQVQSPLLGQQSEGMSEMDMIAA
QQEEADLNAAIAASLMDAGVQFSSYHAAQGSSKPQDAPAPVIEATSSKDSNPEEVDKSEP
SAPPCEDIQEPASGSDTKKEVSSVEEKESAKED
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggcggcgagcaacggcgggctgctgtaccacgaggtgcaggaggggaagctc
tgcgccgtgcactgcgtcaacaccgccctgcaggggcccttcttctccgagttcgacctc
gccgccctcgccgccgacctcgaccagcgggagcgcctcgtcatgctcgagggctcccag
agccccggcgccgccaacgctgccgctggggacttcctcgccgagggatcccacaacgtc
tccctcggaggcgatttcagcatccaggttttgcagaaggccctggaggtttgggacctc
caagtcattcctcttgattccccagctgcaggatcatctctgttcgaccctgagcaggag
gttgctttcatttgccaccttcaggaccactggttctgcatcaggaaggtgaatggggag
tggtacaactttaacagcctctacccagctcctgagcacctgtcaaagttttacctctca
gctttcattgacaccctgaaggggtcaggctggagtatctttgctgttagaggcaatttc
cctaaggagtgccctatggcaactgaaggctctaatggtttcggtcagtggcttacccct
gatgatgcccagaagataacagcctcctgcaaccaggtgcagacacctacccaccaggtg
caatcccctctacttggccagcaatcagaagggatgagtgaaatggacatgattgccgca
cagcaggaagaggctgatctgaatgctgcaatagccgctagcttgatggatgcaggggtt
caattttccagctatcatgcagctcaaggatctagcaagccacaggatgctcccgctcct
gttattgaagcaacttcgagcaaagacagtaacccagaagaagttgataaatctgaacca
agcgctcctccatgtgaggacatccaggagccagcctcaggaagcgacaccaaaaaggag
gtttcttctgtagaggaaaaagaatcagcaaaagaagattag
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